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cxVolumeHelpers.h
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1 /*=========================================================================
2 This file is part of CustusX, an Image Guided Therapy Application.
3 
4 Copyright (c) 2008-2014, SINTEF Department of Medical Technology
5 All rights reserved.
6 
7 Redistribution and use in source and binary forms, with or without
8 modification, are permitted provided that the following conditions are met:
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10 1. Redistributions of source code must retain the above copyright notice,
11  this list of conditions and the following disclaimer.
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13 2. Redistributions in binary form must reproduce the above copyright notice,
14  this list of conditions and the following disclaimer in the documentation
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17 3. Neither the name of the copyright holder nor the names of its contributors
18  may be used to endorse or promote products derived from this software
19  without specific prior written permission.
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21 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
22 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
23 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
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30 OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
31 =========================================================================*/
32 
33 #ifndef CXVOLUMEHELPERS_H_
34 #define CXVOLUMEHELPERS_H_
35 
36 #include "cxResourceExport.h"
37 
38 #include <map>
39 #include "cxVector3D.h"
40 #include "vtkForwardDeclarations.h"
41 #include "cxBoundingBox3D.h"
42 #include "cxTransform3D.h"
43 #include "cxForwardDeclarations.h"
44 
45 namespace cx
46 {
47 typedef boost::shared_ptr<class Image> ImagePtr;
48 typedef boost::shared_ptr<class Data> DataPtr;
49 
55 cxResource_EXPORT vtkImageDataPtr generateVtkImageData(Eigen::Array3i dim, Vector3D spacing, const unsigned char initValue, int components = 1);
56 cxResource_EXPORT vtkImageDataPtr generateVtkImageDataUnsignedShort(Eigen::Array3i dim,
57  Vector3D spacing,
58  const unsigned short initValue,
59  int components = 1);
60 cxResource_EXPORT vtkImageDataPtr generateVtkImageDataSignedShort(Eigen::Array3i dim,
61  Vector3D spacing,
62  const short initValue,
63  int components = 1);
64 cxResource_EXPORT vtkImageDataPtr generateVtkImageDataDouble(Eigen::Array3i dim, Vector3D spacing, double initValue);
65 cxResource_EXPORT void fillShortImageDataWithGradient(vtkImageDataPtr data, int maxValue);
66 cxResource_EXPORT ImagePtr createDerivedImage(PatientModelServicePtr dataManager, QString uid, QString name, vtkImageDataPtr raw, ImagePtr parent);
67 
68 
78 cxResource_EXPORT ImagePtr convertImageToUnsigned(PatientModelServicePtr dataManager, ImagePtr image, vtkImageDataPtr suggestedConvertedVolume = vtkImageDataPtr(), bool verbose = true);
79 
80 cxResource_EXPORT std::map<std::string, std::string> getDisplayFriendlyInfo(ImagePtr image);
81 cxResource_EXPORT std::map<std::string, std::string> getDisplayFriendlyInfo(vtkImageDataPtr image);
82 cxResource_EXPORT void printDisplayFriendlyInfo(std::map<std::string, std::string> map);
83 
84 cxResource_EXPORT int calculateNumVoxelsWithMaxValue(ImagePtr image);
85 cxResource_EXPORT int calculateNumVoxelsWithMinValue(ImagePtr image);
86 
87 cxResource_EXPORT DoubleBoundingBox3D findEnclosingBoundingBox(std::vector<DataPtr> data, Transform3D qMr = Transform3D::Identity());
88 cxResource_EXPORT DoubleBoundingBox3D findEnclosingBoundingBox(std::vector<ImagePtr> data, Transform3D qMr = Transform3D::Identity());
89 
90 
92 
93 cxResource_EXPORT vtkImageDataPtr convertImageDataTo8Bit(vtkImageDataPtr image, double windowWidth, double windowLevel);
94 
101 cxResource_EXPORT void setDeepModified(vtkImageDataPtr image);
102 
103 
108 }
109 
110 
111 #endif /* CXVOLUMEHELPERS_H_ */
std::map< std::string, std::string > getDisplayFriendlyInfo(MeshPtr mesh)
vtkImageDataPtr generateVtkImageDataUnsignedShort(Eigen::Array3i dim, Vector3D spacing, const unsigned short initValue, int components)
Transform3D Transform3D
Transform3D is a representation of an affine 3D transform.
boost::shared_ptr< class Image > ImagePtr
Definition: cxDicomWidget.h:48
int calculateNumVoxelsWithMinValue(ImagePtr image)
Find number of voxels containing min scalar value.
DoubleBoundingBox3D findEnclosingBoundingBox(std::vector< DataPtr > data, Transform3D qMr)
vtkImageDataPtr generateVtkImageDataSignedShort(Eigen::Array3i dim, Vector3D spacing, const short initValue, int components)
ImagePtr convertImageToUnsigned(PatientModelServicePtr dataManager, ImagePtr image, vtkImageDataPtr suggestedConvertedVolume, bool verbose)
boost::shared_ptr< class Data > DataPtr
ImagePtr createDerivedImage(PatientModelServicePtr dataManager, QString uid, QString name, vtkImageDataPtr raw, ImagePtr parent)
vtkImageDataPtr convertImageDataTo8Bit(vtkImageDataPtr image, double windowWidth, double windowLevel)
Have never been used or tested. Create a test for it.
boost::shared_ptr< class PatientModelService > PatientModelServicePtr
void fillShortImageDataWithGradient(vtkImageDataPtr data, int maxValue)
int calculateNumVoxelsWithMaxValue(ImagePtr image)
Find number of voxels containing max scalar value.
vtkImageDataPtr generateVtkImageData(Eigen::Array3i dim, Vector3D spacing, const unsigned char initValue, int components)
Eigen::Vector3d Vector3D
Vector3D is a representation of a point or vector in 3D.
Definition: cxVector3D.h:63
vtkImageDataPtr convertImageDataToGrayScale(vtkImageDataPtr image)
void setDeepModified(vtkImageDataPtr image)
vtkSmartPointer< class vtkImageData > vtkImageDataPtr
void printDisplayFriendlyInfo(std::map< std::string, std::string > map)
vtkImageDataPtr generateVtkImageDataDouble(Eigen::Array3i dim, Vector3D spacing, double initValue)