cxMesh.cpp

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/*=========================================================================
This file is part of CustusX, an Image Guided Therapy Application.

Copyright (c) 2008-2014, SINTEF Department of Medical Technology
All rights reserved.

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modification, are permitted provided that the following conditions are met:

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   this list of conditions and the following disclaimer.

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   this list of conditions and the following disclaimer in the documentation
   and/or other materials provided with the distribution.

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   may be used to endorse or promote products derived from this software
   without specific prior written permission.

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AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 
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#include "cxMesh.h"
#include <vtkCellArray.h>
#include <vtkColorSeries.h>
#include <vtkPolyData.h>
#include <vtkPolyDataWriter.h>
#include <vtkPointData.h>
#include <QDomDocument>
#include <QColor>
#include <QDir>
#include <vtkTransformTextureCoords.h>
#include <vtkTexture.h>
#include <vtkTextureMapToCylinder.h>
#include <vtkTextureMapToPlane.h>
#include <vtkTextureMapToSphere.h>
#include "cxTypeConversions.h"
#include "cxRegistrationTransform.h"
#include "cxBoundingBox3D.h"
#include "cxDataReaderWriter.h"
#include "vtkProperty.h"
#include "vtkImageData.h"


namespace cx
{


//---------------------------------------------------------
//---------------------------------------------------------
//---------------------------------------------------------

MeshPtr Mesh::create(const QString& uid, const QString& name, PatientModelServicePtr patientModelService, SpaceProviderPtr spaceProvider)
{
        return MeshPtr(new Mesh(uid, name, vtkPolyDataPtr(), patientModelService, spaceProvider));
}

Mesh::Mesh(const QString& uid, const QString& name, vtkPolyDataPtr polyData, PatientModelServicePtr patientModelService, SpaceProviderPtr spaceProvider) :
        Data(uid, name), mVtkPolyData(polyData), mHasGlyph(false), mOrientationArray(""), mColorArray(""), mPatientModelService(patientModelService),
        mSpaceProvider(spaceProvider), mTextureData(patientModelService)
{
        if (!mVtkPolyData)
                mVtkPolyData = vtkPolyDataPtr::New();
        connect(&mProperties, &MeshPropertyData::changed, this, &Mesh::meshChanged);
        connect(&mTextureData, &MeshTextureData::changed, this, &Mesh::meshChanged);
        mShowGlyph = shouldGlyphBeEnableByDefault();
        mGlyphLUT ="Citrus";
        this->setAcquisitionTime(QDateTime::currentDateTime());
}

Mesh::~Mesh()
{
}

void Mesh::setIsWireframe(bool on)
{
        if (on)
                mProperties.mRepresentation->setValue(QString::number(VTK_WIREFRAME));
        else
                mProperties.mRepresentation->setValue(QString::number(VTK_SURFACE));
}

bool Mesh::getIsWireframe() const
{
        return mProperties.mRepresentation->getValue().toInt() == VTK_WIREFRAME;
}

bool Mesh::load(QString path)
{
        vtkPolyDataPtr raw;
        raw = DataReaderWriter().loadVtkPolyData(path);
        if(raw)
        {
                this->setVtkPolyData(raw);
                this->setName(QFileInfo(path).baseName());
                this->setFilename(path); // need path even when not set explicitly: nice for testing
        }
        return raw!=0;
}

void Mesh::setVtkPolyData(const vtkPolyDataPtr& polyData)
{
        mVtkPolyData = polyData;
        mOrientationArrayList.clear();
        mColorArrayList.clear();

        if (mVtkPolyData)
        {
                int num;
                for(int k=0; k <  mVtkPolyData->GetPointData()->GetNumberOfArrays(); k++)
                {
                        num=mVtkPolyData->GetPointData()->GetArray(k)->GetNumberOfComponents();
                        if(num==3)
                        {
                                if(strlen(mOrientationArray.c_str())==0)
                                {
                                        mOrientationArray=mVtkPolyData->GetPointData()->GetArrayName(k);
                                        mHasGlyph=true;
                                }
                                mOrientationArrayList << mVtkPolyData->GetPointData()->GetArrayName(k);
                        }
                }
                mColorArrayList << "";
                mColorArray="";
                for(int k=0; k <  mVtkPolyData->GetPointData()->GetNumberOfArrays(); k++)
                {
                        num=mVtkPolyData->GetPointData()->GetArray(k)->GetNumberOfComponents();
                        if(num==1)
                        {
                                mColorArrayList << mVtkPolyData->GetPointData()->GetArrayName(k);
                        }
                }
        }
        mShowGlyph = shouldGlyphBeEnableByDefault();

        emit meshChanged();
}
vtkPolyDataPtr Mesh::getVtkPolyData() const
{
        return mVtkPolyData;
}

vtkTexturePtr Mesh::getVtkTexture() const
{
        return mVtkTexture;
}

void Mesh::addXml(QDomNode& dataNode)
{
        Data::addXml(dataNode);
        QDomDocument doc = dataNode.ownerDocument();

        QDomNode meshNode = dataNode;

        mProperties.addXml(dataNode);
        mTextureData.addXml(dataNode);

        QDomElement glyphNode = doc.createElement("glyph");
        QDomElement elemGlyph = glyphNode.toElement();
        elemGlyph.setAttribute("showGlyph", mShowGlyph);
        elemGlyph.setAttribute("orientationArray", mOrientationArray.c_str());
        elemGlyph.setAttribute("colorArray", mColorArray.c_str());
        elemGlyph.setAttribute("glyphLUT", mGlyphLUT.c_str());
        meshNode.appendChild(elemGlyph);

}

void Mesh::parseXml(QDomNode& dataNode)
{
        Data::parseXml(dataNode);

        // image node must be parsed in the data manager to create this Image object
        // Only subnodes are parsed here

        if (dataNode.isNull())
                return;

        mProperties.parseXml(dataNode);
        mTextureData.parseXml(dataNode);

        QDomNode glyphNode = dataNode.namedItem("glyph");
        if (!glyphNode.isNull())
        {
                mShowGlyph = glyphNode.toElement().attribute("showGlyph").toInt();
                mOrientationArray = glyphNode.toElement().attribute("orientationArray").toStdString();
                mColorArray = glyphNode.toElement().attribute("colorArray").toStdString();
                mGlyphLUT = glyphNode.toElement().attribute("glyphLUT").toStdString();
        }

        emit meshChanged();
}

void Mesh::setColor(const QColor& color)
{
        mProperties.mColor->setValue(color);
}

QColor Mesh::getColor()
{
        return mProperties.mColor->getValue();
}

void Mesh::setBackfaceCullingSlot(bool backfaceCulling)
{
        mProperties.mBackfaceCulling->setValue(backfaceCulling);
}

bool Mesh::getBackfaceCulling()
{
        return mProperties.mBackfaceCulling->getValue();
}

void Mesh::setFrontfaceCullingSlot(bool frontfaceCulling)
{
        mProperties.mFrontfaceCulling->setValue(frontfaceCulling);
        emit meshChanged();
}

bool Mesh::getFrontfaceCulling()
{
        return mProperties.mFrontfaceCulling->getValue();
}

void Mesh::setShowGlyph(bool val)
{
        mShowGlyph = val;
        emit meshChanged();
}

bool Mesh::hasGlyph()
{
        return mHasGlyph;
}

bool Mesh::showGlyph()
{
        return mShowGlyph;
}

bool Mesh::shouldGlyphBeEnableByDefault()
{
        if(! mHasGlyph) return false;
        if(!mVtkPolyData) return false;
        if(mVtkPolyData->GetNumberOfVerts() > 0) return false;
        if(mVtkPolyData->GetNumberOfLines() > 0) return false;
        if(mVtkPolyData->GetNumberOfPolys() > 0) return false;
        if(mVtkPolyData->GetNumberOfStrips() > 0) return false;

        return true;
}


const char * Mesh::getOrientationArray()
{
        return mOrientationArray.c_str();
}

void Mesh::setOrientationArray(const char * orientationArray)
{
        mOrientationArray = orientationArray;
        emit meshChanged();
}

double Mesh::getVisSize()
{
        return mProperties.mVisSize->getValue();
}

void Mesh::setVisSize(double size)
{
        mProperties.mVisSize->setValue(size);
}

const char * Mesh::getColorArray()
{
        return mColorArray.c_str();
}

void Mesh::setColorArray(const char * colorArray)
{
        mColorArray = colorArray;
        emit meshChanged();
}

const char * Mesh::getGlyphLUT()
{
        return mGlyphLUT.c_str();
}

QString Mesh::getTextureShape()
{
        return mTextureData.getTextureShape()->getValue();
}

void Mesh::setGlyphLUT(const char * glyphLUT)
{
        mGlyphLUT = glyphLUT;
        emit meshChanged();
}

bool Mesh::hasTexture() const
{
        if(mTextureData.getTextureImage()->getValue().isEmpty() || mTextureData.getTextureImage()->getImage() == NULL)
                return false;
        else
                return true;
}

void Mesh::updateVtkPolyDataWithTexture()
{
        QString textureShape = this->getTextureShape();
        if (!this->hasTexture())
        {
                mVtkTexture = vtkTexturePtr::New();
                return;
        }

        //create the texture mapper
        vtkDataSetAlgorithmPtr tMapper;
        if(!this->createTextureMapper(tMapper))
                return;

        //Get the image data
        ImagePtr textureImage = mTextureData.getTextureImage()->getImage();
        vtkImageDataPtr vtkImageData = textureImage->getBaseVtkImageData();

        //Create the texture
        mVtkTexture = vtkTexturePtr::New();
        mVtkTexture->SetRepeat(mTextureData.getRepeat()->getValue());
        mVtkTexture->SetInputData(vtkImageData);

        //transform texture coordinates
        //VTK uses r, s and t coordinates. t is only used for 3D texturing which is not supported by VTK yet.
        //We map r and s to match the CustusX X and Y directions.
        vtkTransformTextureCoordsPtr transformTexture = vtkTransformTextureCoordsPtr::New();
        transformTexture->SetInputConnection(tMapper->GetOutputPort());
        double posR = this->getTextureData().getPositionX()->getValue();
        double posS = this->getTextureData().getPositionY()->getValue();
        transformTexture->SetPosition(-posR, -posS, 0);
        double scaleR = this->getTextureData().getScaleX()->getValue();
        double scaleS = this->getTextureData().getScaleY()->getValue();
        transformTexture->SetScale(scaleR, scaleS, 1);
        transformTexture->Update();

        //Update the poly data
        mVtkPolyData = transformTexture->GetPolyDataOutput();
}

bool Mesh::createTextureMapper(vtkDataSetAlgorithmPtr &tMapper)
{
        QString textureShape = this->getTextureShape();

        if (textureShape == mTextureData.getCylinderText())
        {
                tMapper = vtkTextureMapToCylinderPtr::New();
                dynamic_cast<vtkTextureMapToCylinder*>(tMapper.Get())->PreventSeamOn();
        }
        else if (textureShape == mTextureData.getPlaneText())
        {
                vtkTextureMapToPlanePtr mapper = vtkTextureMapToPlanePtr::New();
                DoubleBoundingBox3D bb = this->boundingBox();
                // Explicitly state the plane as the upper xy-plane of the bounding box
                // The automatic plane generation is not deterministic for  square cases.
                mapper->SetOrigin(bb.corner(0,0,1).data());
                mapper->SetPoint1(bb.corner(1,0,1).data());
                mapper->SetPoint2(bb.corner(0,1,1).data());

                tMapper = mapper;
        }
        else if (textureShape == mTextureData.getSphereText())
        {
                tMapper = vtkTextureMapToSpherePtr::New();
        }
        else
        {
                return false;
        }

        tMapper->SetInputData(mVtkPolyData);
        return true;
}

QStringList Mesh::getOrientationArrayList()
{
        return mOrientationArrayList;
}

QStringList Mesh::getColorArrayList()
{
        return mColorArrayList;
}

const MeshPropertyData& Mesh::getProperties() const
{
        return mProperties;
}

const MeshTextureData &Mesh::getTextureData() const
{
        return mTextureData;
}

DoubleBoundingBox3D Mesh::boundingBox() const
{
        //      getVtkPolyData()->Update();
        DoubleBoundingBox3D bounds(getVtkPolyData()->GetBounds());
        return bounds;
}

vtkPolyDataPtr Mesh::getTransformedPolyData(Transform3D transform)
{
        // if transform elements exists, create a copy with entire position inside the polydata:
        if (similar(transform, Transform3D::Identity()))
                return getVtkPolyData();

        //      getVtkPolyData()->Update();
        vtkPolyDataPtr poly = vtkPolyDataPtr::New();
        poly->DeepCopy(getVtkPolyData());
        vtkPointsPtr points = poly->GetPoints();

        vtkPointsPtr floatPoints = vtkPointsPtr::New();
        floatPoints->DeepCopy(points);
        floatPoints->SetDataTypeToFloat();
        for (int i = 0; i < poly->GetNumberOfPoints(); ++i)
        {
                Vector3D p(points->GetPoint(i));
                p = transform.coord(p);
                floatPoints->SetPoint(i, p.begin());
        }
        poly->SetPoints(floatPoints.GetPointer());
        poly->Modified();
        //      poly->Update();

        return poly;
}

bool Mesh::isFiberBundle() const
{
        vtkPolyDataPtr poly = getVtkPolyData();
        return poly->GetLines()->GetNumberOfCells() > 0 && poly->GetPolys()->GetNumberOfCells() == 0 && poly->GetStrips()->GetNumberOfCells() == 0;
}

void Mesh::save(const QString& basePath)
{
        vtkPolyDataWriterPtr writer = vtkPolyDataWriterPtr::New();
        writer->SetInputData(this->getVtkPolyData());
        QString filename = basePath + "/Images/" + this->getUid() + ".vtk";
        this->setFilename(QDir(basePath).relativeFilePath(filename));
        writer->SetFileName(cstring_cast(filename));

        writer->Update();
        writer->Write();
}

} // namespace cx