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cxSyntheticVolume.h
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1 /*=========================================================================
2 This file is part of CustusX, an Image Guided Therapy Application.
3 
4 Copyright (c) 2008-2014, SINTEF Department of Medical Technology
5 All rights reserved.
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11  this list of conditions and the following disclaimer.
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32 
33 #ifndef SYNTHETIC_VOLUME_HPP
34 #define SYNTHETIC_VOLUME_HPP
35 
36 #include "cxtestutilities_export.h"
37 
38 #include "cxUSFrameData.h"
39 #include <vector>
40 #include <cstdlib>
41 #include <time.h>
42 #include "cxMathBase.h"
43 
44 
45 namespace cx {
46 
57 class CXTESTUTILITIES_EXPORT cxSyntheticVolume {
58 public:
59 
61  {
62  // Seed the random number generator
63  srand(time(NULL));
64  mBounds = bounds;
65  }
66  virtual ~cxSyntheticVolume() { };
67 
68  virtual Vector3D
70  {
71  return mBounds;
72  }
73 
90  sampleUsData(const std::vector<Transform3D>& planes_rMf,
91  const Eigen::Array2f& pixelSpacing,
92  const Eigen::Array2i& sliceDimension,
93  const Transform3D& output_dMr,
94  const double noiseSigma,
95  const unsigned char noiseMean) const;
100  sampleUsData(const std::vector<Transform3D>& planes_rMt,
101  const ProbeDefinition& probe,
102  const Transform3D& output_dMr,
103  const double noiseSigma=0,
104  const unsigned char noiseMean=0) const;
108  sampleUsData(const Transform3D& plane_rMt,
109  const ProbeDefinition& probe,
110  const double noiseSigma=0,
111  const unsigned char noiseMean=0) const;
115  sampleUsData(const Transform3D& plane_rMf,
116  const Eigen::Array2f& pixelSpacing,
117  const Eigen::Array2i& sliceDimension,
118  const double noiseSigma,
119  const unsigned char noiseMean) const;
120 
125  virtual unsigned char evaluate(const Vector3D& p) const = 0;
126  virtual void printInfo() const {}
127 
128  void fillVolume(cx::ImagePtr vol);
129  virtual float computeRMSError(cx::ImagePtr vol);
130 
131 protected:
132  unsigned char constrainToUnsignedChar(const int val) const;
133  vtkImageDataPtr createEmptyMask(const Eigen::Array2i& sliceDimension) const;
134 
136 
137 };
138 
139 typedef boost::shared_ptr<cxSyntheticVolume> cxSyntheticVolumePtr;
140 
141 CXTESTUTILITIES_EXPORT double calculateRMSError(vtkImageDataPtr a, vtkImageDataPtr b);
142 CXTESTUTILITIES_EXPORT cx::Vector3D calculateCentroid(cx::ImagePtr image);
143 CXTESTUTILITIES_EXPORT double calculateMass(cx::ImagePtr image);
144 
145 }
146 #endif
147 
Transform3D Transform3D
Transform3D is a representation of an affine 3D transform.
double calculateMass(cx::ImagePtr image)
virtual void printInfo() const
boost::shared_ptr< class Image > ImagePtr
Definition: cxDicomWidget.h:48
cxSyntheticVolume(Vector3D bounds)
boost::shared_ptr< cxSyntheticVolume > cxSyntheticVolumePtr
cx::Vector3D calculateCentroid(cx::ImagePtr image)
double calculateRMSError(vtkImageDataPtr a, vtkImageDataPtr b)
Eigen::Vector3d Vector3D
Vector3D is a representation of a point or vector in 3D.
Definition: cxVector3D.h:63
Definition of characteristics for an Ultrasound Probe Sector.
virtual Vector3D getBounds()
boost::shared_ptr< class ProcessedUSInputData > ProcessedUSInputDataPtr
vtkSmartPointer< class vtkImageData > vtkImageDataPtr