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cxUsReconstructionFileMaker.h
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1 /*=========================================================================
2 This file is part of CustusX, an Image Guided Therapy Application.
3 
4 Copyright (c) 2008-2014, SINTEF Department of Medical Technology
5 All rights reserved.
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7 Redistribution and use in source and binary forms, with or without
8 modification, are permitted provided that the following conditions are met:
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10 1. Redistributions of source code must retain the above copyright notice,
11  this list of conditions and the following disclaimer.
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13 2. Redistributions in binary form must reproduce the above copyright notice,
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21 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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31 =========================================================================*/
32 
33 #ifndef CXUSRECONSTRUCTIONFILEMAKER_H_
34 #define CXUSRECONSTRUCTIONFILEMAKER_H_
35 
36 #include "cxResourceExport.h"
37 
38 class QTextStream;
39 class QDir;
40 
41 #include "cxTool.h"
43 #include "cxForwardDeclarations.h"
44 
45 
46 namespace cx
47 {
48 class TimeInfo;
49 typedef boost::shared_ptr<QTextStream> QTextStreamPtr;
50 typedef boost::shared_ptr<class ImageDataContainer> ImageDataContainerPtr;
51 //typedef boost::shared_ptr<class CachedImageDataContainer> CachedImageDataContainerPtr;
52 typedef boost::shared_ptr<class SavingVideoRecorder> SavingVideoRecorderPtr;
53 
54 
69 class cxResource_EXPORT UsReconstructionFileMaker
70 {
71 public:
72  UsReconstructionFileMaker(QString sessionDescription);
74 
75  static QString createUniqueFolder(QString patientFolder, QString sessionDescription);
76  static QString createFolder(QString patientFolder, QString sessionDescription);
77  USReconstructInputData getReconstructData();
78 
82  QString writeToNewFolder(QString path, bool compression);
83 
84  QString getSessionName() const { return mSessionDescription; }
85 
86 
90  USReconstructInputData getReconstructData(cx::ImageDataContainerPtr imageData,
91  std::vector<cx::TimeInfo> imageTimestamps,
92  TimedTransformMap trackerRecordedData,
93  std::map<double, ToolPositionMetadata> trackerRecordedMetadata,
94  std::map<double, ToolPositionMetadata> referenceRecordedMetadata,
95  ToolPtr tool,
96  QString streamUid,
97  bool writeColor,
98  Transform3D rMpr);
99  void setReconstructData(USReconstructInputData data) { mReconstructData = data; }
100 
101 private:
102  enum TimeStampType
103  {
104  Modified,
105  Scanner,
106  SoftwareArrive,
107  Unknown
108  };
109  bool writeUSTimestamps(QString reconstructionFolder, QString session, std::vector<TimedPosition> ts);
110  bool writeUSTransforms(QString reconstructionFolder, QString session, std::vector<TimedPosition> ts);
111  bool writeTrackerMetadata(QString reconstructionFolder, QString session, const std::map<double, ToolPositionMetadata>& ts);
112  bool writeReferenceMetadata(QString reconstructionFolder, QString session, const std::map<double, ToolPositionMetadata>& ts);
113  bool writeMetadata(QString filename, const std::map<double, ToolPositionMetadata>& ts, QString type);
114  bool writeTrackerTransforms(QString reconstructionFolder, QString session, std::vector<TimedPosition> ts);
115  bool writeTrackerTimestamps(QString reconstructionFolder, QString session, std::vector<TimedPosition> ts);
116  void writeProbeConfiguration(QString reconstructionFolder, QString session, ProbeDefinition data, QString uid);
117  void writeUSImages(QString path, ImageDataContainerPtr images, bool compression, std::vector<TimedPosition> pos);
118  void writeMask(QString path, QString session, vtkImageDataPtr mask);
119  void writeREADMEFile(QString reconstructionFolder, QString session);
120  bool writeTimestamps(QString filename, std::vector<TimedPosition> ts, QString type, TimeStampType timeStampType = Modified);
121 
122  bool writeTransforms(QString filename, std::vector<TimedPosition> ts, QString type);
123  static bool findNewSubfolder(QString subfolderAbsolutePath);
124  void report();
125  void fillFramePositions(USReconstructInputData* data) const;
126 
127  USReconstructInputData mReconstructData;
128  QString mSessionDescription;
129  QStringList mReport;
130 };
131 
132 typedef boost::shared_ptr<UsReconstructionFileMaker> UsReconstructionFileMakerPtr;
133 
138 }
139 #endif /* CXUSRECONSTRUCTIONFILEMAKER_H_ */
Transform3D Transform3D
Transform3D is a representation of an affine 3D transform.
Handles writing files in the format the us reconstruction algorithm wants them.
boost::shared_ptr< class SavingVideoRecorder > SavingVideoRecorderPtr
boost::shared_ptr< QTextStream > QTextStreamPtr
void report(QString msg)
Definition: cxLogger.cpp:90
boost::shared_ptr< class UsReconstructionFileMaker > UsReconstructionFileMakerPtr
vtkSmartPointer< class vtkImageData > vtkImageDataPtr
void setReconstructData(USReconstructInputData data)
std::map< double, Transform3D > TimedTransformMap
boost::shared_ptr< class ImageDataContainer > ImageDataContainerPtr
Definition: cxUSFrameData.h:45
boost::shared_ptr< class Tool > ToolPtr