Fraxinus  16.5.0-fx-rc9
An IGT application
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Macros Groups Pages
cxReconstructPreprocessor.h
Go to the documentation of this file.
1 /*=========================================================================
2 This file is part of CustusX, an Image Guided Therapy Application.
3 
4 Copyright (c) 2008-2014, SINTEF Department of Medical Technology
5 All rights reserved.
6 
7 Redistribution and use in source and binary forms, with or without
8 modification, are permitted provided that the following conditions are met:
9 
10 1. Redistributions of source code must retain the above copyright notice,
11  this list of conditions and the following disclaimer.
12 
13 2. Redistributions in binary form must reproduce the above copyright notice,
14  this list of conditions and the following disclaimer in the documentation
15  and/or other materials provided with the distribution.
16 
17 3. Neither the name of the copyright holder nor the names of its contributors
18  may be used to endorse or promote products derived from this software
19  without specific prior written permission.
20 
21 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
22 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
23 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
24 DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
25 FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
26 DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
27 SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
28 CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
29 OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
30 OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
31 =========================================================================*/
32 
33 #ifndef CXRECONSTRUCTPREPROCESSOR_H_
34 #define CXRECONSTRUCTPREPROCESSOR_H_
35 
36 #include "org_custusx_usreconstruction_Export.h"
37 
38 #include "cxBoundingBox3D.h"
40 #include "cxReconstructCore.h"
42 
43 namespace cx
44 {
45 typedef boost::shared_ptr<class ReconstructPreprocessor> ReconstructPreprocessorPtr;
46 
54 class org_custusx_usreconstruction_EXPORT ReconstructPreprocessor
55 {
56 public:
58  virtual ~ReconstructPreprocessor();
59 
60  // used for reconstruction algo
61  void initialize(ReconstructCore::InputParams input, USReconstructInputData fileData);
62  OutputVolumeParams getOutputVolumeParams() { return mOutputVolumeParams; }
64 
65  std::vector<ProcessedUSInputDataPtr> createProcessedInput(std::vector<bool> angio);
66 
67 private:
68  void cropInputData();
69  IntBoundingBox3D reduceCropboxToImageSize(IntBoundingBox3D cropbox, QSize size);
70  void updateFromOriginalFileData();
71  void findExtentAndOutputTransform();
72  Transform3D applyOutputOrientation();
73  std::vector<Vector3D> generateInputRectangle();
74  void interpolatePositions();
75  double timeToPosition(unsigned i_frame, unsigned i_pos);
76  void applyTimeCalibration();
77  void alignTimeSeries();
78  void calibrateTimeStamps(double offset, double scale);
79 
80  // input data
82  USReconstructInputData mFileData;
83  double mMaxTimeDiff;
84 
85  // generated data
86  OutputVolumeParams mOutputVolumeParams;
87 
88  PatientModelServicePtr mPatientModelService;
89 };
90 
91 } /* namespace cx */
92 
93 #endif // CXRECONSTRUCTPREPROCESSOR_H_
Transform3D Transform3D
Transform3D is a representation of an affine 3D transform.
ReconstructCore::InputParams getInputParams()
Helper struct for sending and controlling output volume properties.
boost::shared_ptr< class ReconstructPreprocessor > ReconstructPreprocessorPtr
boost::shared_ptr< class PatientModelService > PatientModelServicePtr
OutputVolumeParams getOutputVolumeParams()
Representation of an integer bounding box in 3D. The data are stored as {xmin,xmax,ymin,ymax,zmin,zmax}, in order to simplify communication with vtk.
Algorithm part of reconstruction - no dependencies on parameter classes.