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cxDicomConverter.h
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1 /*=========================================================================
2 This file is part of CustusX, an Image Guided Therapy Application.
3 
4 Copyright (c) 2008-2014, SINTEF Department of Medical Technology
5 All rights reserved.
6 
7 Redistribution and use in source and binary forms, with or without
8 modification, are permitted provided that the following conditions are met:
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10 1. Redistributions of source code must retain the above copyright notice,
11  this list of conditions and the following disclaimer.
12 
13 2. Redistributions in binary form must reproduce the above copyright notice,
14  this list of conditions and the following disclaimer in the documentation
15  and/or other materials provided with the distribution.
16 
17 3. Neither the name of the copyright holder nor the names of its contributors
18  may be used to endorse or promote products derived from this software
19  without specific prior written permission.
20 
21 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
22 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
23 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
24 DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
25 FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
26 DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
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30 OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
31 =========================================================================*/
32 
33 #ifndef CXDICOMCONVERTER_H_
34 #define CXDICOMCONVERTER_H_
35 
36 #include "cxImage.h"
37 #include "org_custusx_dicom_Export.h"
38 class ctkDICOMDatabase;
39 
40 namespace cx
41 {
42 typedef boost::shared_ptr<class DicomImageReader> DicomImageReaderPtr;
43 
52 class org_custusx_dicom_EXPORT DicomConverter
53 {
54 public:
56  virtual ~DicomConverter();
57 
58  void setDicomDatabase(ctkDICOMDatabase* database);
59  ImagePtr convertToImage(QString seriesUid);
60 
61 private:
62  QString generateUid(DicomImageReaderPtr reader);
63  QString generateName(DicomImageReaderPtr reader);
64  std::map<double, ImagePtr> sortImagesAlongDirection(std::vector<ImagePtr> images, Vector3D e_sort);
65  ImagePtr mergeSlices(std::map<double, ImagePtr> sorted) const;
66  double getMeanSliceDistance(std::map<double, ImagePtr> sorted) const;
67  bool slicesFormRegularGrid(std::map<double, ImagePtr> sorted, Vector3D e_sort) const;
68  // ignoreLocalizerImages is a tag to ignore special images. For now only localizer images are ignored
69  ImagePtr createCxImageFromDicomFile(QString filename, bool ignoreLocalizerImages);
70  std::vector<ImagePtr> createImages(QStringList files);
71  QString convertToValidFilename(QString text) const;
72 
73  ctkDICOMDatabase* mDatabase;
74 };
75 
76 } /* namespace cx */
77 #endif /* CXDICOMCONVERTER_H_ */
boost::shared_ptr< class Image > ImagePtr
Definition: cxDicomWidget.h:48
boost::shared_ptr< class DicomImageReader > DicomImageReaderPtr
Eigen::Vector3d Vector3D
Vector3D is a representation of a point or vector in 3D.
Definition: cxVector3D.h:63