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cxReconstructPreprocessor.h
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1 /*=========================================================================
2 This file is part of CustusX, an Image Guided Therapy Application.
3 
4 Copyright (c) 2008-2014, SINTEF Department of Medical Technology
5 All rights reserved.
6 
7 Redistribution and use in source and binary forms, with or without
8 modification, are permitted provided that the following conditions are met:
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10 1. Redistributions of source code must retain the above copyright notice,
11  this list of conditions and the following disclaimer.
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13 2. Redistributions in binary form must reproduce the above copyright notice,
14  this list of conditions and the following disclaimer in the documentation
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19  without specific prior written permission.
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21 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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31 =========================================================================*/
32 
33 #ifndef CXRECONSTRUCTPREPROCESSOR_H_
34 #define CXRECONSTRUCTPREPROCESSOR_H_
35 
36 #include "org_custusx_usreconstruction_Export.h"
37 
38 #include "cxBoundingBox3D.h"
40 #include "cxReconstructCore.h"
42 
43 namespace cx
44 {
45 typedef boost::shared_ptr<class ReconstructPreprocessor> ReconstructPreprocessorPtr;
46 
54 class org_custusx_usreconstruction_EXPORT ReconstructPreprocessor
55 {
56 public:
58  virtual ~ReconstructPreprocessor();
59 
60  // used for reconstruction algo
61  void initialize(ReconstructCore::InputParams input, USReconstructInputData fileData);
62  OutputVolumeParams getOutputVolumeParams() { return mOutputVolumeParams; }
64 
65  std::vector<ProcessedUSInputDataPtr> createProcessedInput(std::vector<bool> angio);
66 
67 private:
68  void cropInputData();
69  IntBoundingBox3D reduceCropboxToImageSize(IntBoundingBox3D cropbox, QSize size);
70  void updateFromOriginalFileData();
71  void findExtentAndOutputTransform();
72  Transform3D applyOutputOrientation();
73  std::vector<Vector3D> generateInputRectangle();
74  void interpolatePositions();
75  double timeToPosition(unsigned i_frame, unsigned i_pos);
76  void applyTimeCalibration();
77  void alignTimeSeries();
78  void calibrateTimeStamps(double offset, double scale);
79 
80  // input data
82  USReconstructInputData mFileData;
83  double mMaxTimeDiff;
84 
85  // generated data
86  OutputVolumeParams mOutputVolumeParams;
87 
88  PatientModelServicePtr mPatientModelService;
89 };
90 
91 } /* namespace cx */
92 
93 #endif // CXRECONSTRUCTPREPROCESSOR_H_
Transform3D Transform3D
Transform3D is a representation of an affine 3D transform.
ReconstructCore::InputParams getInputParams()
Helper struct for sending and controlling output volume properties.
boost::shared_ptr< class ReconstructPreprocessor > ReconstructPreprocessorPtr
boost::shared_ptr< class PatientModelService > PatientModelServicePtr
OutputVolumeParams getOutputVolumeParams()
Representation of an integer bounding box in 3D. The data are stored as {xmin,xmax,ymin,ymax,zmin,zmax}, in order to simplify communication with vtk.
Algorithm part of reconstruction - no dependencies on parameter classes.