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cxUsReconstructionFileMaker.h
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1 /*=========================================================================
2 This file is part of CustusX, an Image Guided Therapy Application.
3 
4 Copyright (c) 2008-2014, SINTEF Department of Medical Technology
5 All rights reserved.
6 
7 Redistribution and use in source and binary forms, with or without
8 modification, are permitted provided that the following conditions are met:
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10 1. Redistributions of source code must retain the above copyright notice,
11  this list of conditions and the following disclaimer.
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13 2. Redistributions in binary form must reproduce the above copyright notice,
14  this list of conditions and the following disclaimer in the documentation
15  and/or other materials provided with the distribution.
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17 3. Neither the name of the copyright holder nor the names of its contributors
18  may be used to endorse or promote products derived from this software
19  without specific prior written permission.
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21 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
22 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
23 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
24 DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
25 FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
26 DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
27 SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
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29 OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
30 OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
31 =========================================================================*/
32 
33 #ifndef CXUSRECONSTRUCTIONFILEMAKER_H_
34 #define CXUSRECONSTRUCTIONFILEMAKER_H_
35 
36 #include "cxResourceExport.h"
37 
38 class QTextStream;
39 class QDir;
40 
41 #include "cxTool.h"
43 #include "cxForwardDeclarations.h"
44 
45 
46 namespace cx
47 {
48 class TimeInfo;
49 typedef boost::shared_ptr<QTextStream> QTextStreamPtr;
50 typedef boost::shared_ptr<class ImageDataContainer> ImageDataContainerPtr;
51 //typedef boost::shared_ptr<class CachedImageDataContainer> CachedImageDataContainerPtr;
52 typedef boost::shared_ptr<class SavingVideoRecorder> SavingVideoRecorderPtr;
53 
54 
69 class cxResource_EXPORT UsReconstructionFileMaker
70 {
71 public:
72  UsReconstructionFileMaker(QString sessionDescription);
74 
75  static QString createUniqueFolder(QString patientFolder, QString sessionDescription);
76  static QString createFolder(QString patientFolder, QString sessionDescription);
77  USReconstructInputData getReconstructData();
78 
82  QString writeToNewFolder(QString path, bool compression);
83 
84  QString getSessionName() const { return mSessionDescription; }
85 
86 
90  USReconstructInputData getReconstructData(cx::ImageDataContainerPtr imageData,
91  std::vector<cx::TimeInfo> imageTimestamps,
92  TimedTransformMap trackerRecordedData,
93  std::map<double, ToolPositionMetadata> trackerRecordedMetadata,
94  std::map<double, ToolPositionMetadata> referenceRecordedMetadata,
95  ToolPtr tool,
96  QString streamUid,
97  bool writeColor,
98  Transform3D rMpr);
99  void setReconstructData(USReconstructInputData data) { mReconstructData = data; }
100 
101 private:
102  enum TimeStampType
103  {
104  Modified,
105  Scanner,
106  SoftwareArrive,
107  Unknown
108  };
109  bool writeUSTimestamps(QString reconstructionFolder, QString session, std::vector<TimedPosition> ts);
110  bool writeUSTransforms(QString reconstructionFolder, QString session, std::vector<TimedPosition> ts);
111  bool writeTrackerMetadata(QString reconstructionFolder, QString session, const std::map<double, ToolPositionMetadata>& ts);
112  bool writeReferenceMetadata(QString reconstructionFolder, QString session, const std::map<double, ToolPositionMetadata>& ts);
113  bool writeMetadata(QString filename, const std::map<double, ToolPositionMetadata>& ts, QString type);
114  bool writeTrackerTransforms(QString reconstructionFolder, QString session, std::vector<TimedPosition> ts);
115  bool writeTrackerTimestamps(QString reconstructionFolder, QString session, std::vector<TimedPosition> ts);
116  void writeProbeConfiguration(QString reconstructionFolder, QString session, ProbeDefinition data, QString uid);
117  void writeUSImages(QString path, ImageDataContainerPtr images, bool compression, std::vector<TimedPosition> pos);
118  void writeMask(QString path, QString session, vtkImageDataPtr mask);
119  void writeREADMEFile(QString reconstructionFolder, QString session);
120  bool writeTimestamps(QString filename, std::vector<TimedPosition> ts, QString type, TimeStampType timeStampType = Modified);
121 
122  bool writeTransforms(QString filename, std::vector<TimedPosition> ts, QString type);
123  static bool findNewSubfolder(QString subfolderAbsolutePath);
124  void report();
125  void fillFramePositions(USReconstructInputData* data) const;
126 
127  USReconstructInputData mReconstructData;
128  QString mSessionDescription;
129  QStringList mReport;
130 };
131 
132 typedef boost::shared_ptr<UsReconstructionFileMaker> UsReconstructionFileMakerPtr;
133 
138 }
139 #endif /* CXUSRECONSTRUCTIONFILEMAKER_H_ */
Transform3D Transform3D
Transform3D is a representation of an affine 3D transform.
Handles writing files in the format the us reconstruction algorithm wants them.
boost::shared_ptr< class SavingVideoRecorder > SavingVideoRecorderPtr
boost::shared_ptr< QTextStream > QTextStreamPtr
void report(QString msg)
Definition: cxLogger.cpp:90
boost::shared_ptr< class UsReconstructionFileMaker > UsReconstructionFileMakerPtr
vtkSmartPointer< class vtkImageData > vtkImageDataPtr
void setReconstructData(USReconstructInputData data)
std::map< double, Transform3D > TimedTransformMap
boost::shared_ptr< class ImageDataContainer > ImageDataContainerPtr
Definition: cxUSFrameData.h:45
boost::shared_ptr< class Tool > ToolPtr