CustusX  16.12
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cxRouteToTargetFilterService.cpp
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32 
33 #include "cxRouteToTargetFilterService.h"
34 
35 #include <ctkPluginContext.h>
36 
37 #include "cxAlgorithmHelpers.h"
38 #include "cxSelectDataStringProperty.h"
39 
40 #include "cxUtilHelpers.h"
41 #include "cxRegistrationTransform.h"
42 #include "cxStringProperty.h"
43 #include "cxDoubleProperty.h"
44 #include "cxBoolProperty.h"
45 #include "cxTypeConversions.h"
46 
47 #include "cxRouteToTarget.h"
48 #include "cxPatientModelService.h"
49 #include "cxPointMetric.h"
50 #include "cxVisServices.h"
51 #include "cxStringPropertySelectPointMetric.h"
52 #include "cxPatientModelServiceProxy.h"
53 #include "cxViewService.h"
54 #include "cxLog.h"
55 
56 
57 namespace cx
58 {
59 
60 RouteToTargetFilter::RouteToTargetFilter(VisServicesPtr services) :
61  FilterImpl(services)
62 {
63 }
64 
65 QString RouteToTargetFilter::getName() const
66 {
67  return "Route to target";
68 }
69 
70 QString RouteToTargetFilter::getType() const
71 {
72  return "routetotarget_filter";
73 }
74 
75 QString RouteToTargetFilter::getHelp() const
76 {
77  return "<html>"
78  "<h3>Route to target.</h3>"
79  "<p>Calculates the route to a selected target in navigated bronchocopy."
80  "The rout starts at the top of trachea and ends at the most adjacent airway centerline"
81  "from the target.</p>"
82  "</html>";
83 }
84 
85 
86 void RouteToTargetFilter::createOptions()
87 {
88 
89 }
90 
91 void RouteToTargetFilter::createInputTypes()
92 {
93  StringPropertySelectMeshPtr centerline;
94  centerline = StringPropertySelectMesh::New(mServices->patient());
95  centerline->setValueName("Centerline");
96  centerline->setHelp("Select centerline");
97  mInputTypes.push_back(centerline);
98 
99  StringPropertySelectPointMetricPtr targetPoint;
100  targetPoint = StringPropertySelectPointMetric::New(mServices->patient());
101  targetPoint->setValueName("Target point");
102  targetPoint->setHelp("Select point metric input");
103  mInputTypes.push_back(targetPoint);
104 
105 }
106 
107 void RouteToTargetFilter::createOutputTypes()
108 {
109 
110  StringPropertySelectMeshPtr tempMeshStringAdapter;
111 
112  tempMeshStringAdapter = StringPropertySelectMesh::New(mServices->patient());
113  tempMeshStringAdapter->setValueName("Centerline mesh");
114  tempMeshStringAdapter->setHelp("Generated route to target mesh (vtk-format).");
115  mOutputTypes.push_back(tempMeshStringAdapter);
116 
117 }
118 
119 
120 bool RouteToTargetFilter::execute()
121 {
122  mRouteToTarget.reset(new RouteToTarget());
123 
124  MeshPtr mesh = boost::dynamic_pointer_cast<StringPropertySelectMesh>(mInputTypes[0])->getMesh();
125  if (!mesh)
126  return false;
127 
128  vtkPolyDataPtr centerline_r = mesh->getTransformedPolyData(mesh->get_rMd());
129 
130  PointMetricPtr targetPoint = boost::dynamic_pointer_cast<StringPropertySelectPointMetric>(mInputTypes[1])->getPointMetric();
131  if (!targetPoint)
132  return false;
133 
134  Vector3D targetCoordinate_r = targetPoint->getCoordinate();
135 
136  mRouteToTarget->processCenterline(centerline_r);
137 
138  //note: mOutput is in reference space
139  mOutput = mRouteToTarget->findRouteToTarget(targetCoordinate_r);
140  mExtendedRoute = mRouteToTarget->findExtendedRoute(targetCoordinate_r);
141 
142  return true;
143 }
144 
145 bool RouteToTargetFilter::postProcess()
146 {
147 
148  MeshPtr inputMesh = boost::dynamic_pointer_cast<StringPropertySelectMesh>(mInputTypes[0])->getMesh();
149  if (!inputMesh)
150  return false;
151 
152  QString uidCenterline = inputMesh->getUid() + "_rtt_cl%1";
153  QString nameCenterline = inputMesh->getName()+"_rtt_cl%1";
154  MeshPtr outputCenterline = patientService()->createSpecificData<Mesh>(uidCenterline, nameCenterline);
155  outputCenterline->setVtkPolyData(mOutput);
156  patientService()->insertData(outputCenterline);
157 
158  QString uidCenterlineExt = outputCenterline->getUid() + "_ext";
159  QString nameCenterlineExt = outputCenterline->getName()+"_ext";
160  MeshPtr outputCenterlineExt = patientService()->createSpecificData<Mesh>(uidCenterlineExt, nameCenterlineExt);
161  outputCenterlineExt->setVtkPolyData(mExtendedRoute);
162  outputCenterlineExt->setColor(QColor(0, 0, 255, 255));
163  patientService()->insertData(outputCenterlineExt);
164 
165  //note: mOutput and outputCenterline is in reference(r) space
166 
167 
168  //Meshes are expected to be in data(d) space
169  outputCenterline->get_rMd_History()->setParentSpace(inputMesh->getUid());
170  outputCenterlineExt->get_rMd_History()->setParentSpace(inputMesh->getUid());
171 
172  mServices->view()->autoShowData(outputCenterline);
173 
174  mOutputTypes[0]->setValue(outputCenterline->getUid());
175 
176  return true;
177 }
178 
179 
180 } // namespace cx
181 
cx::FilterImpl::mInputTypes
std::vector< SelectDataStringPropertyBasePtr > mInputTypes
Definition: cxFilterImpl.h:94
cx::Mesh
A mesh data set.
Definition: cxMesh.h:66
cx::VisServicesPtr
boost::shared_ptr< class VisServices > VisServicesPtr
Definition: cxMainWindow.h:62
cx::RouteToTargetFilter::RouteToTargetFilter
RouteToTargetFilter(VisServicesPtr services)
Definition: cxRouteToTargetFilterService.cpp:60
vtkPolyDataPtr
vtkSmartPointer< class vtkPolyData > vtkPolyDataPtr
Definition: cxAirwaysFilterService.h:52
cx::FilterImpl::mServices
VisServicesPtr mServices
Definition: cxFilterImpl.h:103
cx::FilterImpl::patientService
PatientModelServicePtr patientService()
Definition: cxFilterImpl.cpp:51
cx::Mesh::setVtkPolyData
void setVtkPolyData(const vtkPolyDataPtr &polyData)
Definition: cxMesh.cpp:112
cx::Vector3D
Eigen::Vector3d Vector3D
Vector3D is a representation of a point or vector in 3D.
Definition: cxVector3D.h:63
cx::FilterImpl::mOutputTypes
std::vector< SelectDataStringPropertyBasePtr > mOutputTypes
Definition: cxFilterImpl.h:95
cx::StringPropertySelectPointMetric::New
static StringPropertySelectPointMetricPtr New(PatientModelServicePtr patientModelService)
Definition: cxStringPropertySelectPointMetric.h:48
cx::StringPropertySelectMesh::New
static StringPropertySelectMeshPtr New(PatientModelServicePtr patientModelService)
Definition: cxSelectDataStringProperty.h:152
cx::StringPropertySelectPointMetricPtr
boost::shared_ptr< class StringPropertySelectPointMetric > StringPropertySelectPointMetricPtr
Definition: cxStringPropertySelectPointMetric.h:39
cx::MeshPtr
boost::shared_ptr< class Mesh > MeshPtr
Definition: cxForwardDeclarations.h:68
cx::StringPropertySelectMeshPtr
boost::shared_ptr< class StringPropertySelectMesh > StringPropertySelectMeshPtr
Definition: cxRecordSessionSelector.h:47
cx::PointMetricPtr
boost::shared_ptr< class PointMetric > PointMetricPtr
Definition: cxForwardDeclarations.h:103