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cxUsReconstructionFileReader.h
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1 /*=========================================================================
2 This file is part of CustusX, an Image Guided Therapy Application.
3 
4 Copyright (c) 2008-2014, SINTEF Department of Medical Technology
5 All rights reserved.
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7 Redistribution and use in source and binary forms, with or without
8 modification, are permitted provided that the following conditions are met:
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10 1. Redistributions of source code must retain the above copyright notice,
11  this list of conditions and the following disclaimer.
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31 =========================================================================*/
32 #ifndef CXUSRECONSTRUCTIONFILEREADER_H_
33 #define CXUSRECONSTRUCTIONFILEREADER_H_
34 
35 #include "cxResourceExport.h"
36 
37 #include <boost/shared_ptr.hpp>
38 #include <QString>
39 #include "cxTransform3D.h"
41 #include "cxProbeSector.h"
42 #include "cxForwardDeclarations.h"
44 
45 namespace cx
46 {
47 
147 class cxResource_EXPORT UsReconstructionFileReader
148 {
149 public:
150 
151 public:
153 
161  USReconstructInputData readAllFiles(QString fileName, QString calFilesPath = "");
162 
163  std::vector<TimedPosition> readFrameTimestamps(QString fileName);
168  static std::pair<QString, ProbeDefinition> readProbeDefinitionFromFile(QString mhdFileName);
169 
170 private:
171  bool valid(USReconstructInputData input);
172  std::vector<TimedPosition> readPositions(QString fileName);
173  bool readMaskFile(QString mhdFileName, ImagePtr mask);
174  USFrameDataPtr readUsDataFile(QString mhdFileName);
175 
176  void readPositionFile(QString posFile, bool alsoReadTimestamps, std::vector<TimedPosition>* timedPos);
177  void readTimeStampsFile(QString fileName, std::vector<TimedPosition>* timedPos);
178  void readCustomMhdTags(QString mhdFileName, QStringList* probeConfigPath, QString* calFileName);
179  ProbeXmlConfigParser::Configuration readProbeConfiguration(QString calFilesPath, QStringList probeConfigPath);
180  std::pair<QString, ProbeDefinition> readProbeDefinitionBackwardsCompatible(QString mhdFileName, QString calFilesPath);
181 
182 // ImagePtr createMaskFromConfigParams(USReconstructInputData data);
183  ImagePtr generateMask(USReconstructInputData data);
184 };
185 
186 typedef boost::shared_ptr<UsReconstructionFileReader> UsReconstructionFileReaderPtr;
187 
192 } // namespace cx
193 
194 #endif /* CXUSRECONSTRUCTIONFILEREADER_H_ */
< a easy-to-work-with struct for a specific xml configuration
Reader class for the US Acquisition files.
boost::shared_ptr< class Image > ImagePtr
Definition: cxDicomWidget.h:48
boost::shared_ptr< class USFrameData > USFrameDataPtr
boost::shared_ptr< class UsReconstructionFileReader > UsReconstructionFileReaderPtr