Fraxinus  17.12
An IGT application
cxPatientModelImplService.cpp
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1 /*=========================================================================
2 This file is part of CustusX, an Image Guided Therapy Application.
3 
4 Copyright (c) 2008-2014, SINTEF Department of Medical Technology
5 All rights reserved.
6 
7 Redistribution and use in source and binary forms, with or without
8 modification, are permitted provided that the following conditions are met:
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10 1. Redistributions of source code must retain the above copyright notice,
11  this list of conditions and the following disclaimer.
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13 2. Redistributions in binary form must reproduce the above copyright notice,
14  this list of conditions and the following disclaimer in the documentation
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21 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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31 =========================================================================*/
32 
34 
35 #include <ctkPluginContext.h>
36 #include <vtkImageData.h>
37 
38 #include "cxData.h"
39 #include "cxPatientData.h"
41 #include "cxDataFactory.h"
42 #include "cxDataManagerImpl.h"
43 #include "cxSharedPointerChecker.h"
44 #include "cxTrackingServiceProxy.h"
46 #include "cxSpaceProviderImpl.h"
48 #include "cxTrackedStream.h"
49 #include "cxReporter.h"
50 #include "cxVideoSource.h"
51 #include "cxActiveData.h"
52 #include "cxVideoServiceProxy.h"
53 
54 namespace cx
55 {
56 
58  mContext(context)
59 {
60  this->createInterconnectedDataAndSpace();
61 
62  connect(this->dataService().get(), &DataManager::dataAddedOrRemoved, this, &PatientModelService::dataAddedOrRemoved);
63  connect(this->dataService().get(), &DataManager::rMprChanged, this, &PatientModelService::rMprChanged);
64  connect(this->dataService().get(), &DataManager::streamLoaded, this, &PatientModelService::streamLoaded);
66 
67  connect(this->dataService().get(), &DataManager::centerChanged, this, &PatientModelService::centerChanged);
68  connect(this->dataService().get(), &DataManager::operatingTableChanged, this, &PatientModelService::operatingTableChanged);
70 
71  connect(this->patientData().get(), &PatientData::patientChanged, this, &PatientModelService::patientChanged);
72 
73  connect(mTrackingService.get(), &TrackingService::stateChanged, this, &PatientModelImplService::probesChanged);
74 
75  mUnavailableData.clear();
76 }
77 
78 void PatientModelImplService::createInterconnectedDataAndSpace()
79 {
80  // prerequisites:
81  mTrackingService = TrackingServiceProxy::create(mContext);
82 
83  mVideoService = VideoServiceProxy::create(mContext);
84 
85  // build object(s):
86  PatientModelServicePtr patientModelService = PatientModelServiceProxy::create(mContext);
88 
89  mActiveData.reset(new ActiveData(patientModelService, session));
90  mDataService = DataManagerImpl::create(mActiveData);
91 
92  SpaceProviderPtr spaceProvider(new cx::SpaceProviderImpl(mTrackingService, patientModelService));
93  mDataService->setSpaceProvider(spaceProvider);
94 
95  mDataFactory.reset(new DataFactory(patientModelService, spaceProvider));
96  mDataService->setDataFactory(mDataFactory);
97 
98  mPatientData.reset(new PatientData(mDataService, session));
99 }
100 
101 void PatientModelImplService::shutdownInterconnectedDataAndSpace()
102 {
103  requireUnique(mPatientData, "PatientData");
104  mPatientData.reset();
105 
106  // [HACK] break loop by removing connection to DataFactory and SpaceProvider
107  mDataService->setSpaceProvider(SpaceProviderPtr());
108  mDataService->setDataFactory(DataFactoryPtr());
109  mDataService->clear();
110 
111  requireUnique(mDataFactory, "DataFactory");
112  mDataFactory.reset();
113 
114  requireUnique(mDataService, "DataService");
115  mDataService.reset();
116 }
117 
119 {
120  if(dataService())
121  {
122  disconnect(this->dataService().get(), &DataManager::dataAddedOrRemoved, this, &PatientModelService::dataAddedOrRemoved);
123  disconnect(this->dataService().get(), &DataManager::rMprChanged, this, &PatientModelService::rMprChanged);
124  disconnect(this->dataService().get(), &DataManager::streamLoaded, this, &PatientModelService::streamLoaded);
126 
127  disconnect(this->patientData().get(), &PatientData::patientChanged, this, &PatientModelService::patientChanged);
128  }
129 
130  this->shutdownInterconnectedDataAndSpace();
131 }
132 
134 {
135  QString outputBasePath = this->patientData()->getActivePatientFolder();
136 
137  this->dataService()->loadData(data);
138  data->save(outputBasePath);
139 }
140 
141 DataPtr PatientModelImplService::createData(QString type, QString uid, QString name)
142 {
143  return dataService()->getDataFactory()->create(type, uid, name);
144 }
145 
146 std::map<QString, DataPtr> PatientModelImplService::getDatas(DataFilter filter) const
147 {
148  std::map<QString, DataPtr> retval = dataService()->getData();
149 
150  if (filter == HideUnavailable)
151  {
152  for(int i = 0; i < mUnavailableData.size(); ++i)
153  {
154  if (retval.count(mUnavailableData[i]))
155  retval.erase(mUnavailableData[i]);
156  }
157  }
158 
159  return retval;
160 }
161 
162 DataPtr PatientModelImplService::getData(const QString& uid) const
163 {
164  std::map<QString, DataPtr> dataMap = this->getDatas(AllData);
165  std::map<QString, DataPtr>::const_iterator iter = dataMap.find(uid);
166  if (iter == dataMap.end())
167  return DataPtr();
168  return iter->second;
169 }
170 
171 std::map<QString, DataPtr> PatientModelImplService::getChildren(QString parent_uid, QString of_type) const
172 {
173  std::map<QString, DataPtr> retval;
174  std::map<QString, DataPtr> dataMap = this->getDatas(AllData);
175  std::map<QString, DataPtr>::const_iterator iter = dataMap.begin();
176  for ( ; iter != dataMap.end(); ++iter)
177  {
178  if((iter->second->getParentSpace() == parent_uid))
179  if((of_type == "") || (iter->second->getType() == of_type))
180  retval[iter->first] = iter->second;
181  }
182 
183  return retval;
184 }
185 
187 {
188  return dataService()->getPatientLandmarks();
189 }
190 
191 std::map<QString, LandmarkProperty> PatientModelImplService::getLandmarkProperties() const
192 {
193  return dataService()->getLandmarkProperties();
194 }
195 
196 void PatientModelImplService::setLandmarkName(QString uid, QString name)
197 {
198  dataService()->setLandmarkName(uid, name);
199 }
200 
202 {
203  return dataService()->get_rMpr();
204 }
205 
207 {
208  this->patientData()->autoSave();
209 }
210 
212 {
213  return false;
214 }
215 
216 void PatientModelImplService::makeAvailable(const QString &uid, bool available)
217 {
218  if(!available)
219  mUnavailableData.push_back(uid);
220  else
221  {
222  std::vector<QString>::iterator iter = std::find(mUnavailableData.begin(), mUnavailableData.end(), uid);
223  if(iter != mUnavailableData.end())
224  mUnavailableData.erase(iter);
225  }
226 }
227 
229 {
230  return dataService()->getClinicalApplication();
231 }
232 
233 void PatientModelImplService::setClinicalApplication(CLINICAL_VIEW application)
234 {
235  dataService()->setClinicalApplication(application);
236 }
237 
238 std::map<QString, VideoSourcePtr> PatientModelImplService::getStreams() const
239 {
240  return dataService()->getStreams();
241 }
242 
244 {
245  return this->patientData()->getActivePatientFolder();
246 }
247 
249 {
250  return this->patientData()->isPatientValid();
251 }
252 
253 DataPtr PatientModelImplService::importData(QString fileName, QString &infoText)
254 {
255  return this->patientData()->importData(fileName, infoText);
256 }
257 
258 void PatientModelImplService::exportPatient(PATIENT_COORDINATE_SYSTEM externalSpace)
259 {
260  this->patientData()->exportPatient(externalSpace);
261 }
262 
264 {
265  this->patientData()->removeData(uid);
266 }
267 
269 {
270  return dataService()->getPresetTransferFunctions3D();
271 }
272 
274 {
275  this->dataService()->setCenter(center);
276 }
277 
279 {
280  return this->dataService()->getCenter();
281 }
282 
284 {
285  this->dataService()->setOperatingTable(ot);
286 }
287 
289 {
290  return this->dataService()->getOperatingTable();
291 }
292 
294 {
295  return dataService()->addLandmark();
296 }
297 
299 {
300  return dataService()->deleteLandmarks();
301 }
302 
303 void PatientModelImplService::setLandmarkActive(QString uid, bool active)
304 {
305  dataService()->setLandmarkActive(uid, active);
306 }
307 
309 {
310  return this->dataService()->get_rMpr_History();
311 }
312 
314 {
315  return mActiveData;
316 }
317 
318 DataServicePtr PatientModelImplService::dataService() const
319 {
320  return mDataService;
321 }
322 
323 PatientDataPtr PatientModelImplService::patientData() const
324 {
325  return mPatientData;
326 }
327 
328 void PatientModelImplService::probesChanged()
329 {
330  this->disconnectProbes();
331  mProbeTools.clear();
332  this->connectProbes();
333 }
334 
335 void PatientModelImplService::disconnectProbes()
336 {
337  for (std::map<QString, ToolPtr>::const_iterator iter = mProbeTools.begin(); iter != mProbeTools.end(); ++iter)
338  {
339  ProbePtr probe = iter->second->getProbe();
340  if(probe)
341  disconnect(probe.get(), &Probe::videoSourceAdded, this, &PatientModelImplService::videoSourceAdded);
342  else
343  CX_LOG_WARNING() << "PatientModelImplService::disconnectProbes: Tool is not a probe: " << iter->second->getUid();
344  }
345 }
346 
347 void PatientModelImplService::connectProbes()
348 {
349  ToolMap tools = mTrackingService->getTools();
350  for (ToolMap::const_iterator iter = tools.begin(); iter != tools.end(); ++iter)
351  {
352  ToolPtr tool = iter->second;
353  ProbePtr probe = tool->getProbe();
354  if(tool->getProbe())
355  {
356  mProbeTools[iter->first] = tool;
357  connect(probe.get(), &Probe::videoSourceAdded, this, &PatientModelImplService::videoSourceAdded);
358  }
359  }
360 }
361 
362 void PatientModelImplService::videoSourceAdded(VideoSourcePtr source)
363 {
364  ToolPtr tool = this->getProbeTool(source->getUid());
365  if(!tool)
366  return;
367 
368  QString uid = source->getUid() + tool->getUid();
369  QString name = source->getName() + " - " + tool->getName();
370  TrackedStreamPtr trackedStream = this->dataService()->getTrackedStream(uid);
371  if (!trackedStream)
372  trackedStream = this->createSpecificData<TrackedStream>(uid, name);
373  trackedStream->setProbeTool(tool);
374  trackedStream->setVideoSource(source);
375  trackedStream->setSpaceProvider(mDataService->getSpaceProvider());
376 
377  //Only load trackedStream, don't save it
378  this->dataService()->loadData(trackedStream);
380  this->reEmitActiveTrackedStream(trackedStream);
381 }
382 
383 void PatientModelImplService::reEmitActiveTrackedStream(TrackedStreamPtr trackedStream)
384 {
385  if(mActiveData->getActive<TrackedStream>() == trackedStream)
386  mActiveData->setActive(trackedStream);
387 }
388 
389 ToolPtr PatientModelImplService::getProbeTool(QString videoSourceUid)
390 {
391  for (std::map<QString, ToolPtr>::const_iterator iter = mProbeTools.begin(); iter != mProbeTools.end(); ++iter)
392  {
393  ToolPtr tool = iter->second;
394  ProbePtr probe = tool->getProbe();
395  if(probe && probe->getAvailableVideoSources().contains(videoSourceUid))
396  return tool;
397  }
398  reportWarning("Found no probe for stream" + videoSourceUid);
399  return ToolPtr();
400 }
401 
402 } /* namespace cx */
boost::shared_ptr< class SpaceProvider > SpaceProviderPtr
void rMprChanged()
emitted when the transformation between patient reference and (data) reference is set ...
virtual void setCenter(const Vector3D &center)
boost::shared_ptr< class RegistrationHistory > RegistrationHistoryPtr
Definition: cxDataManager.h:58
OperatingTable getOperatingTable() const
virtual PresetTransferFunctions3DPtr getPresetTransferFunctions3D() const
void operatingTableChanged()
void landmarkPropertiesChanged()
emitted when global info about a landmark changed
boost::shared_ptr< class TrackedStream > TrackedStreamPtr
virtual Transform3D get_rMpr() const
get the patient registration transform
Provides the last active data of warious types.
Definition: cxActiveData.h:56
Transform3D Transform3D
Transform3D is a representation of an affine 3D transform.
virtual DataPtr importData(QString fileName, QString &infoText)
boost::shared_ptr< class TransferFunctions3DPresets > PresetTransferFunctions3DPtr
Definition: cxDataManager.h:57
virtual DataPtr createData(QString type, QString uid, QString name)
Functionality for storing patient data in a folder on the disk and access to these data...
Definition: cxPatientData.h:67
static SessionStorageServicePtr create(ctkPluginContext *pluginContext)
boost::shared_ptr< class ActiveData > ActiveDataPtr
Definition: cxColorWidget.h:42
void landmarkPropertiesChanged()
emitted when global info about a landmark changed
virtual ActiveDataPtr getActiveData() const
void centerChanged()
emitted when center is changed.
static VideoServicePtr create(ctkPluginContext *pluginContext)
A data set for video streams (2D/3D).
void centerChanged()
emitted when center is changed.
boost::shared_ptr< class DataManager > DataServicePtr
boost::shared_ptr< class Landmarks > LandmarksPtr
Definition: cxData.h:61
virtual void makeAvailable(const QString &uid, bool available)
Exclude this data from getDatas()
virtual void insertData(DataPtr data)
static TrackingServicePtr create(ctkPluginContext *pluginContext)
void setOperatingTable(const OperatingTable &ot)
boost::shared_ptr< Probe > ProbePtr
Definition: cxProbe.h:93
static PatientModelServicePtr create(ctkPluginContext *pluginContext)
boost::shared_ptr< class Data > DataPtr
void videoSourceAdded(VideoSourcePtr source)
static DataManagerImplPtr create(ActiveDataPtr activeData)
virtual void removeData(QString uid)
virtual std::map< QString, DataPtr > getChildren(QString parent_uid, QString of_type="") const
void reportWarning(QString msg)
Definition: cxLogger.cpp:91
void dataAddedOrRemoved()
std::map< QString, ToolPtr > ToolMap
boost::shared_ptr< class PatientModelService > PatientModelServicePtr
boost::shared_ptr< class VideoSource > VideoSourcePtr
virtual Vector3D getCenter() const
current common center point for user viewing.
virtual QString getActivePatientFolder() const
void patientChanged()
virtual LandmarksPtr getPatientLandmarks() const
landmark defined in patient space
Eigen::Vector3d Vector3D
Vector3D is a representation of a point or vector in 3D.
Definition: cxVector3D.h:63
virtual CLINICAL_VIEW getClinicalApplication() const
virtual void setLandmarkActive(QString uid, bool active)
virtual std::map< QString, VideoSourcePtr > getStreams() const
virtual void exportPatient(PATIENT_COORDINATE_SYSTEM externalSpace)
#define CX_LOG_WARNING
Definition: cxLogger.h:119
boost::shared_ptr< PatientData > PatientDataPtr
virtual std::map< QString, DataPtr > getDatas(DataFilter filter) const
PatientModelImplService(ctkPluginContext *context)
virtual RegistrationHistoryPtr get_rMpr_History() const
The OperatingTable class.
boost::shared_ptr< class DataFactory > DataFactoryPtr
Definition: cxDataManager.h:60
virtual std::map< QString, LandmarkProperty > getLandmarkProperties() const
virtual void setLandmarkName(QString uid, QString name)
void requireUnique(int use_count, QString objectName)
void clinicalApplicationChanged()
virtual void setClinicalApplication(CLINICAL_VIEW application)
boost::shared_ptr< class SessionStorageService > SessionStorageServicePtr
virtual DataPtr getData(const QString &uid) const
Namespace for all CustusX production code.
boost::shared_ptr< class Tool > ToolPtr