Navicad

 

The NAVICAD planning module

The NAVICAD planning module, Fraxinus, offers specialized tools for the different phases of bronchoscopy planning:

  • import of CT images

  • target pinpointing

  • automatic anatomical segmentation of the airways

  • generation of a route to the pinpointed target and navigation with virtual bronchoscopy (VB)

  • advanced state-of-the-art visualization methods AccuSurf (to be published and announced)

  

The CustusX toolkit contains an automatic algorithm for extracting tubular structures such as blood vessels and airways from different image modalities (CT, MR and US) and organs (brain, lung and liver). The algorithm both extracts the surface of the tubular structures and its centerlines. Many parameters can be modified to yield good results for different image modalities and organs. For our bronchoscopy application, these parameters have been optimized to airway segmentation from typical thoracic CT images, and a pre-set of parameters was found. This has simplified the user interaction of the method. SINTEF has also worked on implementing some improvements to the algorithm itself.

 

Download Fraxinus

  DISCLAIMER: This is a research tool: It is not intended for normal clinical use, and is not FDA nor CE approved.

 

univ craiova logo_ucv2en.pngincesa romania logo p0.png  upb.jpg

 

 

logo_en_rgb_positiv.jpg  sintef.jpg  

 

 NAVICAD official project web site: http://navicad.ro
 

   


 

Background

 

In NAVICAD, SINTEF has focused on developing an open source image guided bronchoscopy navigation system based on iterative specifications from pulmonologists and in collaboration with the Romanian team. It is developed from a general open source image-guided intervention software toolkit, the CustusX platform (www.custusx.org) with a simplified graphical user interface (GUI) specialized for planning and guiding bronchoscopy procedures. SINTEF has developed a simplified version of the image guided bronchoscopy system, Fraxinus, the NAVICAD planning module, which does not contain tracking of tools. The underlying platform, CustusX, has support for real-time position tracking of tools using either electromagnetic or infrared positioning systems, this functionality will be enabled for the NAVICAD guidance system in conjunction with the new navigation catheter developed by the Romanian team and tested in collaboration in the last phase of the project. The preclinical testing of the NAVICAD catheter was successfully tested in Trondheim in February 2017.

  

For the guidance part of the NAVICAD platform, we have, in collaboration with the Romanian team refined and tested in the clinic an intraoperative registration method for automatically performing CT-to-patient based registration during the initial phase of the bronchoscopy, i.e. the sedation of the airways. We are using an electromagnetic tracking sensor mounted to the tip of a conventional bronchoscope and position data is acquired continuously during the sedation phase of a bronchoscopic procedure.

 

SINTEF has set up a laboratory test suite for the bronchoscopy navigation system using the Ultrasonic Bronchoscopy Simulator, LM099, KOKEN CO., LTD, Tokyo, Japan. We have acquired CT images of the phantom, to function as navigation maps similar to the real clinical setting. The phantom is connected to a robotic arm, UR5, Universal Robots, Odense, Denmark. The robot arm is inducing respiratory movements to the airways of the phantom to mimic the movements in a humane lung. This makes it possible to test and assess the navigation system regarding accuracy and robustness in a realistic setting.

 

Based on the diversity of objectives, with interfering clinical and experimental aims, there is a certain added value of working together in the partnership, with clear impact towards both the clinical sector (through the expected development of a novel investigation system for focal lung masses) and also towards the medical industry applications.

 

St. Olavs Hospital has contributed in all phases of the project together with both the technological team at SINTEF and in Romania. In the clinic, we have been able to test equipment in realistic setting, assess the accuracy and feasibility and also study the visualization solutions during real patient procedures when the NAVICAD planning and guidance system is used alongside the conventional systems used for bronchoscopy and sampling of peripheral lesions. The clinical goal is to increase the success rates of biopsies using better planning and guidance system developed by the Norway-Romania team collaboration.

 


Funded by

eea grant logo logo-350.png  ministeri logo footer.png  ancsi logo.jpg

 

  • The National Authority for Scientific Research, Bucuresti, Romania

  • Ministerul Educației Nationale, Bucuresti, Romania

  • EEA Grants, and Norway Grants, are the financial contributions of Norway, Iceland and Liechtenstein towards the reduction of economic and social disparities in the European Economic Area (EEA) and to strengthen bilateral relations with 16 EU and EEA Member States in Northern, Central and Southern Europe.

 


Acknowledgments

 

The research leading to these results has received funding from EEA Financial Mechanism 2009 - 2014 under the project EEA-JRP-RO-NO-2013-1-0123 - Navigation System for Confocal Laser Endomicroscopy To Improve Optical Biopsy of Peripheral Lesions in the Lungs (NAVICAD), contract no. 3SEE/30.06.2014. 

 

 

Fraxinus Downloads

Released Fraxinus versions can be found here:

Version 18.10

 

Executables, user documentation and developer documentation is available here:

MacOSX (OSX 10.10 and up)

Linux (Ubuntu 16)

Windows (Windows 10)

Note: see the known issues in the release notes about using Fraxinus on Windows laptops

User Documentation

Release notes

Developer Documentation

 

Version 17.12

 

Executables, user documentation and developer documentation is available here:

MacOSX (OSX 10.10 and up)

Linux (Ubuntu 16)

Windows (Windows 10)

Note: see the known issues in the release notes about using Fraxinus on Windows laptops

User Documentation

Release notes

Developer Documentation

 

Version 16.7.1-beta

(updated: 1. July 2016, changelog: fixed restore button)

Executables, user documentation and developer documentation is available here:

MacOSX (OSX 10.10 and up)

Linux (Ubuntu)

Windows (Windows 10)

User Documentation Developer Documentation

  


 

Nightly Build

 

The project is built every night, and executables, user documentation and developer documentation is available here:

MacOSX (OSX 10.10 and up)

Linux (Ubuntu 16)

Windows (Windows 10)

User Documentation Developer Documentation

 

Test Data

Test data for use with CustusX can be found here: uploads/testdata/.

 

Source Code

Can be found on github.

 

 

 

 

Medical Image Data

This is a collection of medical image data to use for research free of charge

See The USIGT Data Page for details.

All data:

Total Files Count :
Total Size :
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Filename Size Date
explore subfolder image Dataset1
explore subfolder image 3DSlicer
explore subfolder image ALS
explore subfolder image 1
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explore subfolder image ALS
explore subfolder image 1
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explore subfolder image ALS
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A file of unknown type k212-T1_defaced.nii 41.5 MB 2016-04-06
explore subfolder image 214
A file of unknown type k214-FLAIR_defaced.nii 48 MB 2016-04-06
A file of unknown type k214-T1_defaced.nii 48 MB 2016-04-06
explore subfolder image 215
A file of unknown type k215-FLAIR_defaced.nii 48 MB 2016-04-06
A file of unknown type k215-T1_defaced.nii 48 MB 2016-04-06
explore subfolder image 216
A file of unknown type k216-FLAIR_defaced.nii 48 MB 2016-04-06
A file of unknown type k216-T1_defaced.nii 170.5 MB 2016-04-06
explore subfolder image 217
A file of unknown type k217-FLAIR_defaced.nii 38.5 MB 2016-04-06
A file of unknown type k217-T1_defaced.nii 170.5 MB 2016-04-06
explore subfolder image 218
A file of unknown type k218-FLAIR_defaced.nii 48 MB 2016-04-06
A file of unknown type k218-T1_defaced.nii 48 MB 2016-04-06
explore subfolder image 219
A file of unknown type k219-FLAIR_defaced.nii 48 MB 2016-04-06
A file of unknown type k219-T1_defaced.nii 48 MB 2016-04-06
explore subfolder image 220
A file of unknown type k220-FLAIR_defaced.nii 6 MB 2016-04-06
A file of unknown type k220-T1_defaced.nii 176 MB 2016-04-06
explore subfolder image 221
A file of unknown type k221-FLAIR_defaced.nii 48 MB 2016-04-06
A file of unknown type k221-T1_defaced.nii 48 MB 2016-04-06
explore subfolder image 223
A file of unknown type k223-FLAIR_defaced.nii 48 MB 2016-04-06
A file of unknown type k223-T1_defaced.nii 48 MB 2016-04-06
explore subfolder image 224
A file of unknown type k224-FLAIR_defaced.nii 48 MB 2016-04-06
A file of unknown type k224-T1_defaced.nii 48 MB 2016-04-06
explore subfolder image 225
A file of unknown type k225-FLAIR_defaced.nii 48 MB 2016-04-06
A file of unknown type k225-T1_defaced.nii 48 MB 2016-04-06
explore subfolder image 226
A file of unknown type k226-FLAIR_defaced.nii 47.63 MB 2016-04-06
A file of unknown type k226-T1_defaced.nii 176 MB 2016-04-06
explore subfolder image 227
A file of unknown type k227-FLAIR_defaced.nii 40 MB 2016-04-06
A file of unknown type k227-T1_defaced.nii 176 MB 2016-04-06
explore subfolder image 228
A file of unknown type k228-FLAIR_defaced.nii 40 MB 2016-04-06
A file of unknown type k228-T1_defaced.nii 176 MB 2016-04-06
explore subfolder image 229
A file of unknown type k229-FLAIR_defaced.nii 38.5 MB 2016-04-06
A file of unknown type k229-T1_defaced.nii 170.5 MB 2016-04-06
explore subfolder image 230
A file of unknown type k230-FLAIR_defaced.nii 42.28 MB 2016-04-06
A file of unknown type k230-T1_defaced.nii 176 MB 2016-04-06
explore subfolder image 231
A file of unknown type k231-FLAIR_defaced.nii 48 MB 2016-04-06
A file of unknown type k231-T1_defaced.nii 48 MB 2016-04-06
explore subfolder image 232
A file of unknown type k232-FLAIR_defaced.nii 38.5 MB 2016-04-06
A file of unknown type k232-T1_defaced.nii 170.5 MB 2016-04-06
An Adobe Acrobat file MR_parameters.pdf 64.99 KB 2016-04-06

The same data can also be accessed from here: uploads/data/.

Dataset1:

Total Files Count :
Total Size :
Collapse All
Expand All
Filename Size Date
explore subfolder image 3DSlicer
explore subfolder image ALS
explore subfolder image 1
A file of unknown type k211_slicer_1_als-label.nii 24 MB 2016-04-06
A file of unknown type k212_slicer_1_als-label.nii 20.75 MB 2016-04-06
A file of unknown type k214_slicer_1_als-label.nii 24 MB 2016-04-06
A file of unknown type k215_slicer_1_als-label.nii 24 MB 2016-04-06
A file of unknown type k216_slicer_1_als-label.nii 85.25 MB 2016-04-06
A file of unknown type k217_slicer_1_als-label.nii 85.25 MB 2016-04-06
A file of unknown type k218_slicer_1_als-label.nii 24 MB 2016-04-06
A file of unknown type k219_slicer_1_als-label.nii 24 MB 2016-04-06
A file of unknown type k220_slicer_1_als-label.nii 88 MB 2016-04-06
A file of unknown type k221_slicer_1_als-label.nii 24 MB 2016-04-06
A file of unknown type k223_slicer_1_als-label.nii 24 MB 2016-04-06
A file of unknown type k224_slicer_1_als-label.nii 24 MB 2016-04-06
A file of unknown type k226_slicer_1_als-label.nii 88 MB 2016-04-06
A file of unknown type k228_slicer_1_als-label.nii 88 MB 2016-04-06
A file of unknown type k229_slicer_1_als-label.nii 85.25 MB 2016-04-06
A file of unknown type k230_slicer_1_als-label.nii 88 MB 2016-04-06
A file of unknown type k231_slicer_1_als-label.nii 24 MB 2016-04-06
A file of unknown type k232_slicer_1_als-label.nii 85.25 MB 2016-04-06
explore subfolder image 2
A file of unknown type k211_slicer_2_als-label.nii 24 MB 2016-04-06
A file of unknown type k212_slicer_2_als-label.nii 20.75 MB 2016-04-06
A file of unknown type k214_slicer_2_als-label.nii 24 MB 2016-04-06
A file of unknown type k215_slicer_2_als-label.nii 24 MB 2016-04-06
A file of unknown type k216_slicer_2_als-label.nii 85.25 MB 2016-04-06
A file of unknown type k217_slicer_2_als-label.nii 85.25 MB 2016-04-06
A file of unknown type k218_slicer_2_als-label.nii 24 MB 2016-04-06
A file of unknown type k219_slicer_2_als-label.nii 24 MB 2016-04-06
A file of unknown type k220_slicer_2_als-label.nii 88 MB 2016-04-06
A file of unknown type k221_slicer_2_als-label.nii 24 MB 2016-04-06
A file of unknown type k223_slicer_2_als-label.nii 24 MB 2016-04-06
A file of unknown type k224_slicer_2_als-label.nii 24 MB 2016-04-06
A file of unknown type k226_slicer_2_als-label.nii 88 MB 2016-04-06
A file of unknown type k228_slicer_2_als-label.nii 88 MB 2016-04-06
A file of unknown type k229_slicer_2_als-label.nii 85.25 MB 2016-04-06
A file of unknown type k230_slicer_2_als-label.nii 88 MB 2016-04-06
A file of unknown type k231_slicer_2_als-label.nii 24 MB 2016-04-06
A file of unknown type k232_slicer_2_als-label.nii 85.25 MB 2016-04-06
explore subfolder image EHF
explore subfolder image 1
A file of unknown type k211_slicer_1_e-label.nii 24 MB 2016-04-06
A file of unknown type k212_slicer_1_e-label.nii 20.75 MB 2016-04-06
A file of unknown type k214_slicer_1_e-label.nii 24 MB 2016-04-06
A file of unknown type k215_slicer_1_e-label.nii 24 MB 2016-04-06
A file of unknown type k216_slicer_1_e-label.nii 85.25 MB 2016-04-06
A file of unknown type k217_slicer_1_e-label.nii 85.25 MB 2016-04-06
A file of unknown type k218_slicer_1_e-label.nii 24 MB 2016-04-06
A file of unknown type k219_slicer_1_e-label.nii 24 MB 2016-04-06
A file of unknown type k220_slicer_1_e-label.nii 88 MB 2016-04-06
A file of unknown type k221_slicer_1_e-label.nii 24 MB 2016-04-06
A file of unknown type k223_slicer_1_e-label.nii 24 MB 2016-04-06
A file of unknown type k224_slicer_1_e-label.nii 24 MB 2016-04-06
A file of unknown type k226_slicer_1_e-label.nii 88 MB 2016-04-06
A file of unknown type k228_slicer_1_e-label.nii 88 MB 2016-04-06
A file of unknown type k229_slicer_1_e-label.nii 85.25 MB 2016-04-06
A file of unknown type k230_slicer_1_e-label.nii 88 MB 2016-04-06
A file of unknown type k231_slicer_1_e-label.nii 24 MB 2016-04-06
A file of unknown type k232_slicer_1_e-label.nii 85.25 MB 2016-04-06
explore subfolder image 2
A file of unknown type k211_slicer_2_e-label.nii 24 MB 2016-04-06
A file of unknown type k212_slicer_2_e-label.nii 20.75 MB 2016-04-06
A file of unknown type k214_slicer_2_e-label.nii 24 MB 2016-04-06
A file of unknown type k215_slicer_2_e-label.nii 24 MB 2016-04-06
A file of unknown type k216_slicer_2_e-label.nii 85.25 MB 2016-04-06
A file of unknown type k217_slicer_2_e-label.nii 85.25 MB 2016-04-06
A file of unknown type k218_slicer_2_e-label.nii 24 MB 2016-04-06
A file of unknown type k219_slicer_2_e-label.nii 24 MB 2016-04-06
A file of unknown type k220_slicer_2_e-label.nii 88 MB 2016-04-06
A file of unknown type k221_slicer_2_e-label.nii 24 MB 2016-04-06
A file of unknown type k223_slicer_2_e-label.nii 24 MB 2016-04-06
A file of unknown type k224_slicer_2_e-label.nii 24 MB 2016-04-06
A file of unknown type k226_slicer_2_e-label.nii 88 MB 2016-04-06
A file of unknown type k228_slicer_2_e-label.nii 88 MB 2016-04-06
A file of unknown type k229_slicer_2_e-label.nii 85.25 MB 2016-04-06
A file of unknown type k230_slicer_2_e-label.nii 88 MB 2016-04-06
A file of unknown type k231_slicer_2_e-label.nii 24 MB 2016-04-06
A file of unknown type k232_slicer_2_e-label.nii 85.25 MB 2016-04-06
explore subfolder image BV
explore subfolder image ALS
explore subfolder image 1
A file of unknown type k211_bv_1_als-label.nii 24 MB 2016-04-06
A file of unknown type k212_bv_1_als-label.nii 20.75 MB 2016-04-06
A file of unknown type k214_bv_1_als-label.nii 24 MB 2016-04-06
A file of unknown type k215_bv_1_als-label.nii 24 MB 2016-04-06
A file of unknown type k216_bv_1_als-label.nii 85.25 MB 2016-04-06
A file of unknown type k217_bv_1_als-label.nii 85.25 MB 2016-04-06
A file of unknown type k218_bv_1_als-label.nii 24 MB 2016-04-06
A file of unknown type k219_bv_1_als-label.nii 24 MB 2016-04-06
A file of unknown type k220_bv_1_als-label.nii 88 MB 2016-04-06
A file of unknown type k221_bv_1_als-label.nii 24 MB 2016-04-06
A file of unknown type k223_bv_1_als-label.nii 24 MB 2016-04-06
A file of unknown type k224_bv_1_als-label.nii 24 MB 2016-04-06
A file of unknown type k226_bv_1_als-label.nii 88 MB 2016-04-06
A file of unknown type k228_bv_1_als-label.nii 88 MB 2016-04-06
A file of unknown type k229_bv_1_als-label.nii 85.25 MB 2016-04-06
A file of unknown type k230_bv_1_als-label.nii 88 MB 2016-04-06
A file of unknown type k231_bv_1_als-label.nii 24 MB 2016-04-06
A file of unknown type k232_bv_1_als-label.nii 85.25 MB 2016-04-06
explore subfolder image 2
A file of unknown type k211_bv_2_als-label.nii 24 MB 2016-04-06
A file of unknown type k212_bv_2_als-label.nii 20.75 MB 2016-04-06
A file of unknown type k214_bv_2_als-label.nii 24 MB 2016-04-06
A file of unknown type k215_bv_2_als-label.nii 24 MB 2016-04-06
A file of unknown type k216_bv_2_als-label.nii 85.25 MB 2016-04-06
A file of unknown type k217_bv_2_als-label.nii 85.25 MB 2016-04-06
A file of unknown type k218_bv_2_als-label.nii 24 MB 2016-04-06
A file of unknown type k219_bv_2_als-label.nii 24 MB 2016-04-06
A file of unknown type k220_bv_2_als-label.nii 88 MB 2016-04-06
A file of unknown type k221_bv_2_als-label.nii 24 MB 2016-04-06
A file of unknown type k223_bv_2_als-label.nii 24 MB 2016-04-06
A file of unknown type k224_bv_2_als-label.nii 24 MB 2016-04-06
A file of unknown type k226_bv_2_als-label.nii 88 MB 2016-04-06
A file of unknown type k228_bv_2_als-label.nii 88 MB 2016-04-06
A file of unknown type k229_bv_2_als-label.nii 85.25 MB 2016-04-06
A file of unknown type k230_bv_2_als-label.nii 88 MB 2016-04-06
A file of unknown type k231_bv_2_als-label.nii 24 MB 2016-04-06
A file of unknown type k232_bv_2_als-label.nii 85.25 MB 2016-04-06
explore subfolder image EHF
explore subfolder image 1
A file of unknown type k211_bv_1_e-label.nii 24 MB 2016-04-06
A file of unknown type k212_bv_1_e-label.nii 20.75 MB 2016-04-06
A file of unknown type k214_1_bv_e-label.nii 24 MB 2016-04-06
A file of unknown type k215_1_bv_e-label.nii 24 MB 2016-04-06
A file of unknown type k216_1_bv_e-label.nii 85.25 MB 2016-04-06
A file of unknown type k217_1_bv_e-label.nii 85.25 MB 2016-04-06
A file of unknown type k218_1_bv_e-label.nii 24 MB 2016-04-06
A file of unknown type k219_1_bv_e-label.nii 24 MB 2016-04-06
A file of unknown type k220_1_bv_e-label.nii 88 MB 2016-04-06
A file of unknown type k221_1_bv_e-label.nii 24 MB 2016-04-06
A file of unknown type k223_1_bv_e-label.nii 24 MB 2016-04-06
A file of unknown type k224_1_bv_e-label.nii 24 MB 2016-04-06
A file of unknown type k226_1_bv_e-label.nii 88 MB 2016-04-06
A file of unknown type k228_1_bv_e-label.nii 88 MB 2016-04-06
A file of unknown type k229_1_bv_e-label.nii 85.25 MB 2016-04-06
A file of unknown type k230_1_bv_e-label.nii 88 MB 2016-04-06
A file of unknown type k231_1_bv_e-label.nii 24 MB 2016-04-06
A file of unknown type k232_1_bv_e-label.nii 85.25 MB 2016-04-06
explore subfolder image 2
A file of unknown type k211_2_bv_e-label.nii 24 MB 2016-04-06
A file of unknown type k212_2_bv_e-label.nii 20.75 MB 2016-04-06
A file of unknown type k214_2_bv_e-label.nii 24 MB 2016-04-06
A file of unknown type k215_2_bv_e-label.nii 24 MB 2016-04-06
A file of unknown type k216_2_bv_e-label.nii 85.25 MB 2016-04-06
A file of unknown type k217_2_bv_e-label.nii 85.25 MB 2016-04-06
A file of unknown type k218_2_bv_e-label.nii 24 MB 2016-04-06
A file of unknown type k219_2_bv_e-label.nii 24 MB 2016-04-06
A file of unknown type k220_2_bv_e-label.nii 88 MB 2016-04-06
A file of unknown type k221_2_bv_e-label.nii 24 MB 2016-04-06
A file of unknown type k223_2_bv_e-label.nii 24 MB 2016-04-06
A file of unknown type k224_2_bv_e-label.nii 24 MB 2016-04-06
A file of unknown type k226_2_bv_e-label.nii 88 MB 2016-04-06
A file of unknown type k228_2_bv_e-label.nii 88 MB 2016-04-06
A file of unknown type k229_2_bv_e-label.nii 85.25 MB 2016-04-06
A file of unknown type k230_2_bv_e-label.nii 88 MB 2016-04-06
A file of unknown type k231_2_bv_e-label.nii 24 MB 2016-04-06
A file of unknown type k232_2_bv_e-label.nii 85.25 MB 2016-04-06
explore subfolder image ITK
explore subfolder image ALS
explore subfolder image 1
A file of unknown type k211_itk_1_als-label.nii 24 MB 2016-04-06
A file of unknown type k212_itk_1_als-label.nii 20.75 MB 2016-04-06
A file of unknown type k214_itk_1_als-label.nii 24 MB 2016-04-06
A file of unknown type k215_itk_1_als-label.nii 24 MB 2016-04-06
A file of unknown type k216_itk_1_als-label.nii 85.25 MB 2016-04-06
A file of unknown type k217_itk_1_als-label.nii 85.25 MB 2016-04-06
A file of unknown type k218_itk_1_als-label.nii 24 MB 2016-04-06
A file of unknown type k219_itk_1_als-label.nii 24 MB 2016-04-06
A file of unknown type k220_itk_1_als-label.nii 88 MB 2016-04-06
A file of unknown type k221_itk_1_als-label.nii 24 MB 2016-04-06
A file of unknown type k223_itk_1_als-label.nii 24 MB 2016-04-06
A file of unknown type k224_itk_1_als-label.nii 24 MB 2016-04-06
A file of unknown type k226_itk_1_als-label.nii 88 MB 2016-04-06
A file of unknown type k228_itk_1_als-label.nii 88 MB 2016-04-06
A file of unknown type k229_itk_1_als-label.nii 85.25 MB 2016-04-06
A file of unknown type k230_itk_1_als-label.nii 88 MB 2016-04-06
A file of unknown type k231_itk_1_als-label.nii 24 MB 2016-04-06
A file of unknown type k232_itk_1_als-label.nii 85.25 MB 2016-04-06
explore subfolder image 2
A file of unknown type k211_itk_2_als-label.nii 24 MB 2016-04-06
A file of unknown type k212_itk_2_als-label.nii 20.75 MB 2016-04-06
A file of unknown type k214_itk_2_als-label.nii 24 MB 2016-04-06
A file of unknown type k215_itk_2_als-label.nii 24 MB 2016-04-06
A file of unknown type k216_itk_2_als-label.nii 85.25 MB 2016-04-06
A file of unknown type k217_itk_2_als-label.nii 85.25 MB 2016-04-06
A file of unknown type k218_itk_2_als-label.nii 24 MB 2016-04-06
A file of unknown type k219_itk_2_als-label.nii 24 MB 2016-04-06
A file of unknown type k220_itk_2_als-label.nii 88 MB 2016-04-06
A file of unknown type k221_itk_2_als-label.nii 24 MB 2016-04-06
A file of unknown type k223_itk_2_als-label.nii 24 MB 2016-04-06
A file of unknown type k224_itk_2_als-label.nii 24 MB 2016-04-06
A file of unknown type k226_itk_2_als-label.nii 88 MB 2016-04-06
A file of unknown type k228_itk_2_als-label.nii 88 MB 2016-04-06
A file of unknown type k229_itk_2_als-label.nii 85.25 MB 2016-04-06
A file of unknown type k230_itk_2_als-label.nii 88 MB 2016-04-06
A file of unknown type k231_itk_2_als-label.nii 24 MB 2016-04-06
A file of unknown type k232_itk_2_als-label.nii 85.25 MB 2016-04-06
explore subfolder image EHF
explore subfolder image 1
A file of unknown type k211_itk_1_e-label.nii 24 MB 2016-04-06
A file of unknown type k212_itk_1_e-label.nii 20.75 MB 2016-04-06
A file of unknown type k214_itk_1_e-label.nii 24 MB 2016-04-06
A file of unknown type k215_itk_1_e-label.nii 24 MB 2016-04-06
A file of unknown type k216_itk_1_e-label.nii 84.77 MB 2016-04-06
A file of unknown type k217_itk_1_e-label.nii 85.25 MB 2016-04-06
A file of unknown type k218_itk_1_e-label.nii 24 MB 2016-04-06
A file of unknown type k219_itk_1_e-label.nii 24 MB 2016-04-06
A file of unknown type k220_itk_1_e-label.nii 88 MB 2016-04-06
A file of unknown type k221_itk_1_e-label.nii 24 MB 2016-04-06
A file of unknown type k223_itk_1_e-label.nii 24 MB 2016-04-06
A file of unknown type k224_itk_1_e-label.nii 24 MB 2016-04-06
A file of unknown type k226_itk_1_e-label.nii 88 MB 2016-04-06
A file of unknown type k228_itk_1_e-label.nii 88 MB 2016-04-06
A file of unknown type k229_itk_1_e-label.nii 85.25 MB 2016-04-06
A file of unknown type k230_itk_1_e-label.nii 88 MB 2016-04-06
A file of unknown type k231_itk_1_e-label.nii 24 MB 2016-04-06
A file of unknown type k232_itk_1_e-label.nii 85.25 MB 2016-04-06
explore subfolder image 2
A file of unknown type k211_itk_2_e-label.nii 24 MB 2016-04-06
A file of unknown type k212_itk_2_e-label.nii 20.75 MB 2016-04-06
A file of unknown type k214_itk_2_e-label.nii 24 MB 2016-04-06
A file of unknown type k215_itk_2_e-label.nii 24 MB 2016-04-06
A file of unknown type k216_itk_2_e-label.nii 84.77 MB 2016-04-06
A file of unknown type k217_itk_2_e-label.nii 85.25 MB 2016-04-06
A file of unknown type k218_itk_2_e-label.nii 24 MB 2016-04-06
A file of unknown type k219_itk_2_e-label.nii 24 MB 2016-04-06
A file of unknown type k220_itk_2_e-label.nii 88 MB 2016-04-06
A file of unknown type k221_itk_2_e-label.nii 24 MB 2016-04-06
A file of unknown type k223_itk_2_e-label.nii 24 MB 2016-04-06
A file of unknown type k224_itk_2_e-label.nii 24 MB 2016-04-06
A file of unknown type k226_itk_2_e-label.nii 88 MB 2016-04-06
A file of unknown type k228_itk_2_e-label.nii 88 MB 2016-04-06
A file of unknown type k229_itk_2_e-label.nii 85.25 MB 2016-04-06
A file of unknown type k230_itk_2_e-label.nii 88 MB 2016-04-06
A file of unknown type k231_itk_2_e-label.nii 24 MB 2016-04-06
A file of unknown type k232_itk_2_e-label.nii 85.25 MB 2016-04-06
explore subfolder image MRI
explore subfolder image 211
A file of unknown type k211-FLAIR_defaced.nii 48 MB 2016-04-06
A file of unknown type k211-T1_defaced.nii 48 MB 2016-04-06
explore subfolder image 212
A file of unknown type k212-FLAIR_defaced.nii 224 MB 2016-04-06
A file of unknown type k212-T1_defaced.nii 41.5 MB 2016-04-06
explore subfolder image 214
A file of unknown type k214-FLAIR_defaced.nii 48 MB 2016-04-06
A file of unknown type k214-T1_defaced.nii 48 MB 2016-04-06
explore subfolder image 215
A file of unknown type k215-FLAIR_defaced.nii 48 MB 2016-04-06
A file of unknown type k215-T1_defaced.nii 48 MB 2016-04-06
explore subfolder image 216
A file of unknown type k216-FLAIR_defaced.nii 48 MB 2016-04-06
A file of unknown type k216-T1_defaced.nii 170.5 MB 2016-04-06
explore subfolder image 217
A file of unknown type k217-FLAIR_defaced.nii 38.5 MB 2016-04-06
A file of unknown type k217-T1_defaced.nii 170.5 MB 2016-04-06
explore subfolder image 218
A file of unknown type k218-FLAIR_defaced.nii 48 MB 2016-04-06
A file of unknown type k218-T1_defaced.nii 48 MB 2016-04-06
explore subfolder image 219
A file of unknown type k219-FLAIR_defaced.nii 48 MB 2016-04-06
A file of unknown type k219-T1_defaced.nii 48 MB 2016-04-06
explore subfolder image 220
A file of unknown type k220-FLAIR_defaced.nii 6 MB 2016-04-06
A file of unknown type k220-T1_defaced.nii 176 MB 2016-04-06
explore subfolder image 221
A file of unknown type k221-FLAIR_defaced.nii 48 MB 2016-04-06
A file of unknown type k221-T1_defaced.nii 48 MB 2016-04-06
explore subfolder image 223
A file of unknown type k223-FLAIR_defaced.nii 48 MB 2016-04-06
A file of unknown type k223-T1_defaced.nii 48 MB 2016-04-06
explore subfolder image 224
A file of unknown type k224-FLAIR_defaced.nii 48 MB 2016-04-06
A file of unknown type k224-T1_defaced.nii 48 MB 2016-04-06
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A file of unknown type k225-FLAIR_defaced.nii 48 MB 2016-04-06
A file of unknown type k225-T1_defaced.nii 48 MB 2016-04-06
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A file of unknown type k226-FLAIR_defaced.nii 47.63 MB 2016-04-06
A file of unknown type k226-T1_defaced.nii 176 MB 2016-04-06
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A file of unknown type k227-FLAIR_defaced.nii 40 MB 2016-04-06
A file of unknown type k227-T1_defaced.nii 176 MB 2016-04-06
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A file of unknown type k228-FLAIR_defaced.nii 40 MB 2016-04-06
A file of unknown type k228-T1_defaced.nii 176 MB 2016-04-06
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A file of unknown type k229-FLAIR_defaced.nii 38.5 MB 2016-04-06
A file of unknown type k229-T1_defaced.nii 170.5 MB 2016-04-06
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A file of unknown type k230-FLAIR_defaced.nii 42.28 MB 2016-04-06
A file of unknown type k230-T1_defaced.nii 176 MB 2016-04-06
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A file of unknown type k231-FLAIR_defaced.nii 48 MB 2016-04-06
A file of unknown type k231-T1_defaced.nii 48 MB 2016-04-06
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A file of unknown type k232-FLAIR_defaced.nii 38.5 MB 2016-04-06
A file of unknown type k232-T1_defaced.nii 170.5 MB 2016-04-06
An Adobe Acrobat file MR_parameters.pdf 64.99 KB 2016-04-06

The same data can also be accessed from here: uploads/data/Dataset1.

Acknowledgements

Acknowledgements

When publishing scientific work that uses CustusX, please cite the following publication:

Christian Askeland, Ole Vegard Solberg, Janne Beate Lervik Bakeng, Ingerid Reinertsen, Geir Arne Tangen, Erlend Fagertun Hofstad, Daniel Høyer Iversen, Cecilie Våpenstad, Tormod Selbekk, Thomas Langø, Toril A. Nagelhus Hernes, Håkon Olav Leira, Geirmund Unsgård, Frank Lindseth. CustusX: an open-source research platform for image-guided therapy, International Journal of Computer Assisted Radiology and Surgery, 09/2015, DOI: 10.1007/s11548-015-1292-0

 Also refer to the web site custusx.org.

 

Contributors

CustusX was created by and is maintained by SINTEF Medical Technology, in cooperation with the Norwegian National Competence Centre for Ultrasound and Image-Guided Therapy (St. Olavs Hospital, SINTEF, NTNU). An extended version of the platform is used daily in research at St. Olavs Hospital and partners.

The work on CustusX began in 1998. The current platform was initialized in 2009, and was used internally until it was converted to an open source project in 2014.

Related projects
 
 

Regional Anaesthesia Simulator and Assistant

Fraxinus

 

Funding

The following bodies have supported the CustusX work either directly or through various research projects: